Gene Information

Name : RHE_CH03938 (RHE_CH03938)
Accession : YP_471410.1
Strain : Rhizobium etli CFN 42
Genome accession: NC_007761
Putative virulence/resistance : Resistance
Product : ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis)
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 4165701 - 4166408 bp
Length : 708 bp
Strand : +
Note : similar to AGR_C_4858p [Agrobacterium tumefaciens]; Similar to swissprot:Q8UC18; location:bacterial cytoplasm Psort-Score: 0.1452

DNA sequence :
TTGGCAAAAACCATCATCGAGTTGAAGAGCGCCGATCTGACCCTTGGCAGTGCCGCCGCTTCCGTCCATGTGCTGAAGGG
CATCGACCTCGATATATTAGCCGGCGAATCCGTCGGCATTGTCGGCCCATCGGGTTCCGGCAAGTCCACCCTGCTGATGG
TGCTTGCTGGATTGGAGAAGCTCGACAGCGGTGAAATCAACATCAACGACACGCCGCTCCATGCGCTCAGCGAGGACGAG
GTCGCCGATTTCCGCGGCCGCAACATCGGCATCGTCTTCCAGTCCTTCCACCTGATTGCCAATATGACGGCGCTGGAAAA
CGTCGCCGTGCCGCTGGAACTCGCCAATATCAGCAACGCCTTCGAAATCGCCCATCGCGAGCTGAATTCCGTCGGCCTGG
GCGAACGGTTGAACCACTATCCGGGCCAACTTTCCGGCGGCGAACAGCAGCGCGTGGCGATCGCAAGGGCGCTGGCCCCC
TCGCCCGCTTTGCTGATCGCCGACGAGCCCACCGGCAATCTCGATACCGAGACCGGCCGCCAGATCGCCGACCTTCTCTT
CGCCAAACAGGCCGAACGCGGCATGACCCTGCTGCTCGTCACTCACGACGTCTCGCTTGCGAACCGCTGCTCGCGCCAGA
TCCGCGTTCGCTCCGGCCGGATCGAAGGCGACAGCGCCGCCCGCCGCAGCGAGGCGGCAATCGCATGA

Protein sequence :
MAKTIIELKSADLTLGSAAASVHVLKGIDLDILAGESVGIVGPSGSGKSTLLMVLAGLEKLDSGEININDTPLHALSEDE
VADFRGRNIGIVFQSFHLIANMTALENVAVPLELANISNAFEIAHRELNSVGLGERLNHYPGQLSGGEQQRVAIARALAP
SPALLIADEPTGNLDTETGRQIADLLFAKQAERGMTLLLVTHDVSLANRCSRQIRVRSGRIEGDSAARRSEAAIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-28 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHE_CH03938 YP_471410.1 ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis) NC_008702.1.4606598. Protein 9e-35 47
RHE_CH03938 YP_471410.1 ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis) NC_012469.1.7686878. Protein 1e-37 44
RHE_CH03938 YP_471410.1 ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis) CP001581.1.gene798.p Protein 4e-34 41