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Name : clpB (RHE_CH03753) Accession : YP_471229.1 Strain : Rhizobium etli CFN 42 Genome accession: NC_007761 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3977528 - 3980128 bp Length : 2601 bp Strand : - Note : similar to clpB (SMc02433) [Sinorhizobium meliloti] and clpB (Atu4177) [Agrobacterium tumefaciens str. C58]; Similar to swissprot:Q92MK7; location:bacterial cytoplasm Psort-Score: 0.2218 DNA sequence : ATGAATATCGAGAAATATTCCGAGCGGGTGCGCGGTTTCATCCAGTCGGCCCAGACCTATGCGCTGGCGCAGGGGCATCA GCAATTTTCACCCGAACATGTGCTCAAAGTCCTGCTCGATGACGATCAAGGCATGGCGGCGTCGCTGATCGAGCGCGCCG GCGGCGATGCCAAGGCTGCCCGCCTTGCCAATGACGCGGCCCTTGCCAAGTTGCCGAAGATATCCGGCGGCAACGGCAAC ATCTATCTGGCGCAACCGCTTGCCAAGGTGTTTTCGACCGCTGAAGAGGCGGCAAAGAAGGCCGGCGACAGTTTCGTCAC CGTCGAACGCCTGCTGCAGGCGCTGGCGATCGAAACCACGGCTTCGACCTCCTCGACGCTTAAGAATGCAGGCGTAACCG CCCAGGGCCTCAACCAGGTTATCAACGATATCCGCAAGGGGCGGACGGCGGATTCCGCCAATGCCGAGCAGGGTTTCGAC TCGCTGAAGAAATATGCGCGGGATCTCACCGGCGAGGCCCGCGAGGGCAAGCTCGATCCGGTGATCGGCCGCGACGATGA AATTCGCCGTACCATCCAGGTCCTGTCCCGTCGCACCAAGAACAATCCGGTGCTGATCGGCGAGCCGGGCGTCGGCAAGA CGGCGATCGTCGAAGGTCTGGCTCTGCGCATCGTCAACGGCGACGTGCCGGAATCGCTCAAGGACAAGAAGCTGATGGCG CTCGACATGGGCGCGCTGATTGCCGGCGCGAAATACCGCGGCGAATTCGAAGAGCGGCTGAAAGCGGTCCTCAATGAAGT TCAGGCGGAAAACGGCGAGATCATACTGTTCATTGACGAGATGCACACGCTGGTCGGCGCCGGCAAAGCGGACGGTGCGA TGGATGCCTCCAACCTTCTAAAGCCTGCGCTTGCCCGCGGCGAGCTGCATTGCGTCGGCGCAACGACGCTCGACGAATAT CGTAAACATGTCGAGAAGGATCCGGCGCTTGCCCGCCGCTTCCAGCCTGTCGTCGTCGACGAACCGACGGTCGAAGATAC GATCTCGATCCTGCGCGGACTCAAGGAAAAATACGAGCAGCATCACAAGGTTCGCATCGCCGATGCGGCGCTGGTCGCGG CCGCGACGCTGTCCAACCGCTATATCACGGATCGCTTCCTGCCCGACAAGGCGATCGATCTAATGGATGAGGCGGCGGCG CGACTGCGCATGCAGGTGGATTCCAAGCCGGAAGAACTCGATGAACTCGACCGCCGGATCATCCAGATGAAGATCGAGCG TGAGGCGCTGAAGAAGGAAACCGACGTTGCTTCCGCCGACCGGCTGAAGCGGCTGGAGACCGAACTCACCGCGCTTGAAG AGGAAGCCCATGCGCTGACGGCCCGCTGGCAGGCGGAAAAGCAGAAGCTCGGCCTTGCCGCAGATCTCAAGAAGCAGCTC GACGACGCCCGCAATGAACTGGCGATTGCTCAGCGCAAGGGTGAATTCCAGCGCGCCGGCGAGCTCACCTACGGCGTCAT TCCGGATCTCGAAAAGCAGCTGGTCGAAGCGGAGAAGCAGGATGGCGAGCGCGGTGCGATGGTGCAGGAGGTGGTCAGCC CCGACAATATCGCCCATGTCGTTTCCCGCTGGACCGGCATTCCGGTCGACAAGATGCTGGAGGGTGAACGCGACAAGCTG CTTCGGATGGAAGACGAGCTGGCGAAATCTGTGATCGGCCAGGGCGATGCGGTTCAGGCCGTGTCGCGCGCCGTCCGCCG CGCCCGCGCCGGTCTGCAAGATCCGAACCGGCCGATCGGCTCGTTCATCTTCCTCGGCCCGACCGGCGTCGGCAAGACGG AGCTTACCAAGGCACTCGCCCGCTTCCTCTTCGATGACGAAACGGCGATGGTGCGCATGGACATGTCGGAATACATGGAG AAACACTCCGTCGCCCGACTGATCGGTGCGCCTCCCGGCTATGTCGGCTATGACGAGGGCGGAGCGCTGACGGAAGCTGT GCGCCGCAGGCCTTATCAGGTCGTCCTATTCGACGAGATCGAAAAGGCGCATCCCGACGTCTTCAACATCCTGCTGCAGG TGCTGGATGACGGACGCCTGACGGACGGCCAGGGCCGGACGGTCGATTTCCGCAACACGATGATCATCATGACCTCGAAC CTCGGCGCCGAATATCTCACACAGCTGCCGGACGGCGAGGACAGCGACTCGGTTCGCGAGCAAGTGATGGAGGTCGTGCG CGGGCATTTCCGGCCGGAATTCCTGAACCGTATCGATGAAATCATCCTCTTCCACCGCCTGAAGCGCGAGGAAATGGGCG CGATCGTCGACATCCAGCTGAAGCGGCTGGTGGCGCTGTTGTCCGAACGCAAGATCGTCATCGATCTCGACGAGGAAGCC CGCCACTGGCTGGCGAATAAGGGTTACGATCCGATTTACGGCGCCAGGCCGCTGAAGCGGGTGATCCAGAAATTCGTGCA GGACCCGCTGGCCGAGCAGATCCTGTCCGGCCAGGTGCCGGATGGATCGACGGTGAAGGTGACGAACGGTTCGGACCGGC TGCAGTTCAGGACGCGGCAGACGGTGAGCGAAGCCGCGTAA Protein sequence : MNIEKYSERVRGFIQSAQTYALAQGHQQFSPEHVLKVLLDDDQGMAASLIERAGGDAKAARLANDAALAKLPKISGGNGN IYLAQPLAKVFSTAEEAAKKAGDSFVTVERLLQALAIETTASTSSTLKNAGVTAQGLNQVINDIRKGRTADSANAEQGFD SLKKYARDLTGEAREGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKKLMA LDMGALIAGAKYRGEFEERLKAVLNEVQAENGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY RKHVEKDPALARRFQPVVVDEPTVEDTISILRGLKEKYEQHHKVRIADAALVAAATLSNRYITDRFLPDKAIDLMDEAAA RLRMQVDSKPEELDELDRRIIQMKIEREALKKETDVASADRLKRLETELTALEEEAHALTARWQAEKQKLGLAADLKKQL DDARNELAIAQRKGEFQRAGELTYGVIPDLEKQLVEAEKQDGERGAMVQEVVSPDNIAHVVSRWTGIPVDKMLEGERDKL LRMEDELAKSVIGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETAMVRMDMSEYME KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTMIIMTSN LGAEYLTQLPDGEDSDSVREQVMEVVRGHFRPEFLNRIDEIILFHRLKREEMGAIVDIQLKRLVALLSERKIVIDLDEEA RHWLANKGYDPIYGARPLKRVIQKFVQDPLAEQILSGQVPDGSTVKVTNGSDRLQFRTRQTVSEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-106 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_471229.1 | ATP-dependent Clp protease, ATP-binding subunit protein | VFG2084 | Protein | 5e-106 | 43 |
| clpB | YP_471229.1 | ATP-dependent Clp protease, ATP-binding subunit protein | VFG2076 | Protein | 7e-117 | 42 |
