Gene Information

Name : kdsB1 (RHE_CH00132)
Accession : YP_467684.1
Strain : Rhizobium etli CFN 42
Genome accession: NC_007761
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 142290 - 143045 bp
Length : 756 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGGGTGATTCAAATTTCGACGACGTGCTTGTATTGATCCCGGCACGGATGGCCTCCACTCGGCTTCCGGGCAAGCCGCT
CGCCGACATTTGCGGACTGCCGATGATCGTGCAGGTGGCGATGCGCGCAAAAGAAGCCGAAATCGGCCGGGTCGTCGTCG
CCGTCGACGACCCGCAGGTGTTCGACACGGTGGCGGCCGCCGGCTTCGAAGTCGTCATGACCAGCAAGGATCATCAATCC
GGCTCCGACCGCATCTTCGAGGCGCTGAAGAAGATCGATCCGGACGGCAAGGCAAAGTTCATCGTCAACGTCCAGGGCGA
CCTGCCGACGATCGAGCCGGAAACGGTGCGGGCGGCCTTGCGCCCCCTCGAGAACGAAGCGGTCGATATCGGCACGCTGA
CCATCGAAATCGATAATGAGGAGGACAAGACCGCGCCGCACATCGTCAAGGTCATCGGCTCGCCGATTTCCGACAACCGC
CTGCGCGGCCTCTACTTCACTCGTGCGACGGCGCCATACGGCAAGGGGCCGCTTTACCATCATATCGGCCTCTATGCCTA
CCGGCGCGCTGCGCTCGAACGGTTCGTCTCACTCGGCCCGTCGACGCTTGAAAGGCGAGAATCGCTGGAGCAGCTGCGGG
CACTGGAGGCTGGCATGCGCATCGATGCCGAGATCGTTGACACGGTTCCGCTCGGTGTCGATACTCCGGCCGACCTCGAA
AAAGCGCGGCGAATCCTCTCTGCACGGCAGAATTGA

Protein sequence :
MGDSNFDDVLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAKEAEIGRVVVAVDDPQVFDTVAAAGFEVVMTSKDHQS
GSDRIFEALKKIDPDGKAKFIVNVQGDLPTIEPETVRAALRPLENEAVDIGTLTIEIDNEEDKTAPHIVKVIGSPISDNR
LRGLYFTRATAPYGKGPLYHHIGLYAYRRAALERFVSLGPSTLERRESLEQLRALEAGMRIDAEIVDTVPLGVDTPADLE
KARRILSARQN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 3e-33 43
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 7e-32 43
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 5e-32 43