|
Name : kdsB1 (RHE_CH00132) Accession : YP_467684.1 Strain : Rhizobium etli CFN 42 Genome accession: NC_007761 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 142290 - 143045 bp Length : 756 bp Strand : - Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGGGTGATTCAAATTTCGACGACGTGCTTGTATTGATCCCGGCACGGATGGCCTCCACTCGGCTTCCGGGCAAGCCGCT CGCCGACATTTGCGGACTGCCGATGATCGTGCAGGTGGCGATGCGCGCAAAAGAAGCCGAAATCGGCCGGGTCGTCGTCG CCGTCGACGACCCGCAGGTGTTCGACACGGTGGCGGCCGCCGGCTTCGAAGTCGTCATGACCAGCAAGGATCATCAATCC GGCTCCGACCGCATCTTCGAGGCGCTGAAGAAGATCGATCCGGACGGCAAGGCAAAGTTCATCGTCAACGTCCAGGGCGA CCTGCCGACGATCGAGCCGGAAACGGTGCGGGCGGCCTTGCGCCCCCTCGAGAACGAAGCGGTCGATATCGGCACGCTGA CCATCGAAATCGATAATGAGGAGGACAAGACCGCGCCGCACATCGTCAAGGTCATCGGCTCGCCGATTTCCGACAACCGC CTGCGCGGCCTCTACTTCACTCGTGCGACGGCGCCATACGGCAAGGGGCCGCTTTACCATCATATCGGCCTCTATGCCTA CCGGCGCGCTGCGCTCGAACGGTTCGTCTCACTCGGCCCGTCGACGCTTGAAAGGCGAGAATCGCTGGAGCAGCTGCGGG CACTGGAGGCTGGCATGCGCATCGATGCCGAGATCGTTGACACGGTTCCGCTCGGTGTCGATACTCCGGCCGACCTCGAA AAAGCGCGGCGAATCCTCTCTGCACGGCAGAATTGA Protein sequence : MGDSNFDDVLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAKEAEIGRVVVAVDDPQVFDTVAAAGFEVVMTSKDHQS GSDRIFEALKKIDPDGKAKFIVNVQGDLPTIEPETVRAALRPLENEAVDIGTLTIEIDNEEDKTAPHIVKVIGSPISDNR LRGLYFTRATAPYGKGPLYHHIGLYAYRRAALERFVSLGPSTLERRESLEQLRALEAGMRIDAEIVDTVPLGVDTPADLE KARRILSARQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 7e-32 | 43 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 5e-32 | 43 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 3e-33 | 43 |
