Gene Information

Name : RHE_CH01043 (RHE_CH01043)
Accession : YP_468579.1
Strain : Rhizobium etli CFN 42
Genome accession: NC_007761
Putative virulence/resistance : Virulence
Product : two-component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1094963 - 1095655 bp
Length : 693 bp
Strand : -
Note : similar to mlr4457 [Mesorhizobium loti] and AGR_C_1118p [Agrobacterium tumefaciens]; Similar to swissprot:Q98E09; location:bacterial inner membrane Psort-Score: 0.1086

DNA sequence : 
ATGCGGCCGATGCGAATCCTGCTTATCGAGGACGATATCAAGACGTCCGACTATATCGCCAAGGGCTTCACGGAGGCCGG
GCACGTCTGTGACGTGTTCGGCGACGGCCGCGACGGGTTATTTCAGGCGCAGCGCGAGGCCTATGACGTCATCGTCGTCG
ATCGCATGCTGCCGGGTCTCGATGGGCTGGCGATCATCCGCTCGTTGCGCGCCGCCAAGGTCGGCACGCCGGCGCTGTTC
CTGACCTCGATCGGCGGCGTCGACGACCGGGTCGAGGGGCTGGAGGCCGGCGGCGACGATTATCTCACCAAACCTTTCGC
CTTCTCCGAGCTTCTGGCGCGCGTCAATGCGCTCGGCCGGCGCCCGCCGGTGCAGGAGCAGCGCACGGTCTTGAAGGTCG
CCGATCTGGAGCTCGATCTGATCCGGCGGGAGGCGCGGCGCGCCGGCCAGGCGATCGAGCTGCAGCCGCGCGAATTCACC
CTGCTCGAGGTGCTGATGCGCGGCGAAGGCCGTGTCATCACCAAAACCATGCTCCTGGAGCGGGTCTGGGATTTCCACTT
CGACCCGAAGACCAGCGTCGTGGAGACCCATATCAGCCGCCTCAGGGCCAAGGTCGACAAGCCGTTCCAGGCCCAGCTTC
TGCATACGATTCGCAACACCGGATACAGCCTGCATGCGCCTCGAACAGGATGA

Protein sequence : 
MRPMRILLIEDDIKTSDYIAKGFTEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGLDGLAIIRSLRAAKVGTPALF
LTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPPVQEQRTVLKVADLELDLIRREARRAGQAIELQPREFT
LLEVLMRGEGRVITKTMLLERVWDFHFDPKTSVVETHISRLRAKVDKPFQAQLLHTIRNTGYSLHAPRTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-43 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0083 Protein 2e-52 51
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0197 Protein 4e-51 49
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0638 Protein 5e-47 49
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0125 Protein 9e-50 47
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0347 Protein 8e-47 46
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0111 Protein 5e-51 45
RHE_CH01043 YP_468579.1 two-component response regulator protein BAC0308 Protein 1e-48 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHE_CH01043 YP_468579.1 two-component response regulator protein VFG0596 Protein 5e-44 47
RHE_CH01043 YP_468579.1 two-component response regulator protein VFG1389 Protein 9e-32 42