|
Name : tetA (RHE_CH01023) Accession : YP_468560.1 Strain : Rhizobium etli CFN 42 Genome accession: NC_007761 Putative virulence/resistance : Resistance Product : tetracycline efflux transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 1074761 - 1076080 bp Length : 1320 bp Strand : - Note : similar to tetA (AGR_L_1300p) [Agrobacterium tumefaciens] and TetA [Escherichia coli]; Similar to swissprot:Q7CUB3; location:bacterial inner membrane Psort-Score: 0.4652 DNA sequence : ATGCGCTTCAGCCATGGTTCGGCCAGCACCTCCCTGAAACCAACGCCTGACCAGATCAGGCCTCATCGTGAGCCATCGGC GCACTCTGTCGGCGCTCGTGCGCTCGCGTCGACCCGGAACGCACCCATGACAAGATCCCTTATCGTCATCTTCACCGCCA TTGTCCTCGATGCCGTCGGCATCGGGCTGATTTTCCCGATCCTGCCGTCGCTGCTGCAGGAGATCACCCATGCCCAAAAC GTCGCGCCCACGATCGGCGCGATGACGGCGCTCTACGCGCTGATGCAGTTCATCTTCGCCCCGGTGCTCGGGGCGCTGAG CGACCGGCTCGGCCGCCGCCCGGTGCTGCTGATTTCGCTGGCCGGCGCGGCCGTCAACTATCTCTTCCTCGCCTTCGCGC CCAATCTGACCCTGCTCTTCGTCGGCCGGGCGATCGCCGGGCTGACGAGCGCCAATATCTCGGTGGCGACAGCCTATATC ACCGATATCTCGCCGGAGGAGAAACGCGCCCGCCGCTTCGGCCTGTTCAACGCCATGTTCGGCCTCGGCTTCATCATCGG CCCGGTCGCCGGCGGCGTGCTCGGCGATCATTGGCTGCGGCTGCCCTTCATCGCAGCCGCCGTGCTCAACGGCGCCAACC TGCTGCTCGCCGTCTTCATCCTGCCGGAATCGCGCCCGGGCAGCCGCGAGACGATCGATCTGGCGGCGCTCAATCCGCTC AAACCGCTGCGCTCGGTGCTGGAGGTCAAAAGCCTGCTGCCGATCGTCATCCTGTTCTTCATCTTCAGCGCCACCGGCGA GGCCTATGGCACCTGCTGGGCGCTCTGGGGCAGCGACGCCTTCCACTGGAACGGGCTGTCGATCGGCCTTTCGCTGGGCG CCTTCGGCATCTGCCAGACGCTCGCCCAGGCGCTGCTGCCCGGACCGGCCGTCAGGCTGCTCGGTGAGCGCGCCGCGATC CTCGTGGGTGTTGCCGGCGTTTCACTCGCGCTCACCGTCATGGCCTTTGCCGGCCAGGGCTGGATGATCTTCGCCGTCAT GCCGATCTTCACCCTCGGCGGCATCGGCGTACCGGCGCTGCAATCGCTCGCCACCCGGCAGGTCGACGAGAACAGTCAGG GCCAGTTCCAGGGCGTGCTGGCCTCAGTCGTCAGCCTCGCCTCGATCGCAGCACCGCTCGGCTTTTCCAGCCTCTATTTC CTCGTCCGAGAGGAATGGCCGGGCGCCATCTGGCTATCGGTCGTCGCCGTCTACGCGCTCACCGTGCCGCTGGTGCTCGG GTTGCGGCTGAAGACGGCGGAGCGGGCGGCGGTGAGTTAG Protein sequence : MRFSHGSASTSLKPTPDQIRPHREPSAHSVGARALASTRNAPMTRSLIVIFTAIVLDAVGIGLIFPILPSLLQEITHAQN VAPTIGAMTALYALMQFIFAPVLGALSDRLGRRPVLLISLAGAAVNYLFLAFAPNLTLLFVGRAIAGLTSANISVATAYI TDISPEEKRARRFGLFNAMFGLGFIIGPVAGGVLGDHWLRLPFIAAAVLNGANLLLAVFILPESRPGSRETIDLAALNPL KPLRSVLEVKSLLPIVILFFIFSATGEAYGTCWALWGSDAFHWNGLSIGLSLGAFGICQTLAQALLPGPAVRLLGERAAI LVGVAGVSLALTVMAFAGQGWMIFAVMPIFTLGGIGVPALQSLATRQVDENSQGQFQGVLASVVSLASIAAPLGFSSLYF LVREEWPGAIWLSVVAVYALTVPLVLGLRLKTAERAAVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 6e-70 | 48 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 9e-70 | 48 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 6e-70 | 48 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 6e-70 | 48 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 2e-71 | 47 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-71 | 47 |
| tetA | CAJ77034.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 1e-57 | 44 |
| tet(G) | AAK02051.1 | tetracycline resistance protein | Not tested | SGI1 | Protein | 8e-56 | 44 |
| tetA(G) | ABZ01843.1 | TetA(G) | Not tested | SGI2 | Protein | 8e-56 | 44 |
| tetA(G) | AGK06974.1 | TetA(G) | Not tested | SGI1 | Protein | 8e-56 | 44 |
| tetA(G) | AGK07104.1 | TetA(G) | Not tested | SGI1 | Protein | 8e-56 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_011595.7059241.p0 | Protein | 2e-103 | 62 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_011586.7043399.p0 | Protein | 8e-103 | 62 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_010410.6003291.p0 | Protein | 3e-103 | 62 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_009085.4918440.p0 | Protein | 2e-96 | 60 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AF090987.gene.p01 | Protein | 2e-73 | 51 |
| tetA | YP_468560.1 | tetracycline efflux transporter | Y19114.gene.p01 | Protein | 3e-71 | 49 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AY264780.2.gene3.p01 | Protein | 2e-77 | 49 |
| tetA | YP_468560.1 | tetracycline efflux transporter | X75761.gene.p01 | Protein | 1e-68 | 48 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_011586.7045189.p0 | Protein | 2e-63 | 47 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_010410.6002597.p0 | Protein | 1e-71 | 47 |
| tetA | YP_468560.1 | tetracycline efflux transporter | CP001485.1.gene2821. | Protein | 1e-71 | 47 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AF534183.gene.p01 | Protein | 4e-71 | 47 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AY743590.gene.p01 | Protein | 1e-73 | 46 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AF133140.gene.p01 | Protein | 7e-58 | 44 |
| tetA | YP_468560.1 | tetracycline efflux transporter | NC_010410.6002612.p0 | Protein | 7e-58 | 44 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AF133139.gene.p01 | Protein | 1e-56 | 43 |
| tetA | YP_468560.1 | tetracycline efflux transporter | Y19116.gene.p01 | Protein | 3e-51 | 42 |
| tetA | YP_468560.1 | tetracycline efflux transporter | AJ420072.gene.p01 | Protein | 8e-57 | 42 |
| tetA | YP_468560.1 | tetracycline efflux transporter | L06940.gene.p01 | Protein | 4e-53 | 41 |
