Gene Information

Name : SYN_00024 (SYN_00024)
Accession : YP_460093.1
Strain : Syntrophus aciditrophicus SB
Genome accession: NC_007759
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 49638 - 50357 bp
Length : 720 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGAATGAAGACAGCCCTGCGGCAACGGCCATGGTTTCCATTCGAGGCGTCAGCAAATCCTACTGGCGGGGAACCCG
CCCTGTCCCCGTGCTGGAGAATATTACCTTCGATATTGCCGAAGGGGAATTTCTCGCCCTCATGGGCCCCTCGGGATCGG
GAAAGAGCACCCTCCTCAATCTCATCGCCGGCATCGACACCGTGGACAGCGGGACGATCCTCGTGGGCGGTCTGGATATC
ACGACCCTTTCGGAAACGGAACTCGCCCGCTGGAGGGCGACCCATGTGGGATTCATCTTTCAGTTCTACAATCTCATTCC
CGTGCTCACCGCTTACGAAAACGTGGAGCTTCCCCTTCACCTCACGTCCCTGTCCCGGAAGGAACGTCGGGAACATGTGG
AGATGGCCCTGCGGGTCGTGAATCTGTCCGACCGGAGCGATCACTATCCGCGCCAGCTCTCGGGAGGAGAACAGCAGCGG
GTCGCCATCGCCAGGGCGGTGATCACCGATCCATCGATCCTCGTTGCCGATGAACCCACCGGGGATCTGGACCGGCGATC
CGCTGCGGAGATCCTGAACCTTATGGAACGCCTCAACGAAGAGTCCGGCAAGACCATTATCATGGTGACTCATGACCCCC
GGGCAGCGGAAAAGGCCAGGATTGTCCGACACCTGGAGAAGGGAACCCTGACGGATGACGCTCTTTCGGCTCCTCTTTAG

Protein sequence : 
MKNEDSPAATAMVSIRGVSKSYWRGTRPVPVLENITFDIAEGEFLALMGPSGSGKSTLLNLIAGIDTVDSGTILVGGLDI
TTLSETELARWRATHVGFIFQFYNLIPVLTAYENVELPLHLTSLSRKERREHVEMALRVVNLSDRSDHYPRQLSGGEQQR
VAIARAVITDPSILVADEPTGDLDRRSAAEILNLMERLNEESGKTIIMVTHDPRAAEKARIVRHLEKGTLTDDALSAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-39 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYN_00024 YP_460093.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-45 49
SYN_00024 YP_460093.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-40 47
SYN_00024 YP_460093.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 9e-40 41