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Name : fliP (SYN_02835) Accession : YP_461382.1 Strain : Syntrophus aciditrophicus SB Genome accession: NC_007759 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 1357366 - 1358154 bp Length : 789 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGATGACTAGATACATCAATGATGCCCTGAAAGATATTGTTCCTGAAGTTTTACTGCTTGTTATCCTTTTCACTGTGTT GGGGCCAGGGGTTGCTTCCGCGGAACCTTTATCTTTGCCGAACATCAGCTTGACTGTCGGTGGAAATGCGGATTCTCCGG ACAAAGTGGCAACGGTCATTCAGCTTCTTTTCATCCTGACCGTGTTGTCACTGACACCGGCGATCCTGTTGATGCTTACC TCATTTACCCGCATTGTGATCGTCCTTTCTCTGCTAAGGCAGGCCATGGGCACGCAGCAGATGCCTTCAAATCAGATTAT CATCGGTTTGTCTCTGTTCCTGACCTTTTTTATTATGTCTCCCGTGTGGCAGAGCGTGCACAGTGAAGCGTTAAAACCTT ATTATGATGAGGAAATATCAGGAGAACAGGCAATCGAAAGGGCCGTCATTCCCGTTAAAGCATTTATGCTGAAGCAGACT CGAGAGAAGGACATTGCCCTGTTTCTGCAGATATCCAAAGGAAAAAGACCGGAGAAGCCAGCCGATCTGGCGCTTTCCGT TCTGGTTCCCGCCTTTGTGATCAGTGAGCTTAAAACGGCATTCCAGATCGGATTTCTGTTGTTTTTGCCTTTTTTTATTA TTGACATGGTGGTTGCCAGCGTTCTGCTTTCCATGGGGATGATGATGCTTCCCCCGATTATGATGAGTCTGCCTTTCAAG CTGCTGTTATTCGTCCTGGTGGATGGATGGTATTTGATTATCGGATCGCTCGTTCAGAGTTTTCATTAG Protein sequence : MMTRYINDALKDIVPEVLLLVILFTVLGPGVASAEPLSLPNISLTVGGNADSPDKVATVIQLLFILTVLSLTPAILLMLT SFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFIMSPVWQSVHSEALKPYYDEEISGEQAIERAVIPVKAFMLKQT REKDIALFLQISKGKRPEKPADLALSVLVPAFVISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIMMSLPFK LLLFVLVDGWYLIIGSLVQSFH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-19 | 45 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-18 | 42 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 6e-18 | 41 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 8e-18 | 41 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 8e-18 | 41 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-19 | 41 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-20 | 41 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-19 | 41 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 8e-20 | 41 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 8e-20 | 41 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-14 | 41 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-14 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 2e-41 | 59 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 2e-35 | 58 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 9e-42 | 55 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-35 | 50 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 6e-16 | 43 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 4e-18 | 41 |
| fliP | YP_461382.1 | flagellar biosynthesis protein FliP | VFG0188 | Protein | 3e-15 | 41 |
