Gene Information

Name : SYN_00981 (SYN_00981)
Accession : YP_461223.1
Strain : Syntrophus aciditrophicus SB
Genome accession: NC_007759
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1200162 - 1200899 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAGGCGGAACAAAGGAGGATTTCATGCCCACAGGACAGAAGCGCATCCTGGTTGTGGATGACGAAAAGGATATCGT
GGAACTCCTGACCTTTAATCTGGAAAAGGAAGGCTTTGCCGTCACGCAGGCTTTCGATGGAGAAGAGGCGTTAAAAACAA
TCCGGACCAATAAGCCGGATCTTGTGATTCTCGATCTGATGCTGCCCGGCGTTTCAGGACTGGATATCTGTCGGCAGGTA
CGCCGCAACGAGGAGACAGAAACCCTTCCTGTTATCATGCTAACTGCGAAAGGCGAGCCGCTGGACAAGGTCGTTGGTCT
GGAAATCGGGGCTGATGATTACATCACCAAACCGTTCAACGTGCGGGAACTGGTGGCGCGGGTGAGAGCCGTGCTGCGCC
GGTCCAGTCAGCGGCCGAAGGAAGCTTCGGAAGGGACATTCACATTTCAGGGGCTTCATGTGGATTATCGAACCTACCAG
GTTTCTGTGGACGGGAAAAAGATTGAACTGGGACCGACGGAGATCAAACTGCTGCGGTGCCTTACCCGCCAGCCCGGGAG
GGTCTTCAGCCGGGATCAGTTGCTCGATGCCGTCTGGGGAGAGGAGGCCTTCGTAGAGCCCAGGACGGTTGATGTCCATA
TCAGCCGCCTGCGAGCGGATATTGAACAGGATAAAGAAAAACCGAAATATATACTGACCGTCCGGGGGATCGGCTACAAA
TTCGCCGATGGTTCCTGA

Protein sequence : 
MEGGTKEDFMPTGQKRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLDICRQV
RRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRSSQRPKEASEGTFTFQGLHVDYRTYQ
VSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLLDAVWGEEAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYK
FADGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-35 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYN_00981 YP_461223.1 response regulator AE000516.2.gene3505. Protein 1e-43 49
SYN_00981 YP_461223.1 response regulator HE999704.1.gene2815. Protein 5e-43 47
SYN_00981 YP_461223.1 response regulator NC_002952.2859905.p0 Protein 2e-41 47
SYN_00981 YP_461223.1 response regulator NC_003923.1003749.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_002758.1121668.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_009641.5332272.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_013450.8614421.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_007793.3914279.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_007622.3794472.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_002745.1124361.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_009782.5559369.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator NC_002951.3237708.p0 Protein 1e-41 47
SYN_00981 YP_461223.1 response regulator AE016830.1.gene1681. Protein 5e-41 45
SYN_00981 YP_461223.1 response regulator NC_012469.1.7685629. Protein 4e-43 45
SYN_00981 YP_461223.1 response regulator EU250284.1.orf4.gene Protein 3e-33 45
SYN_00981 YP_461223.1 response regulator NC_005054.2598277.p0 Protein 2e-37 44
SYN_00981 YP_461223.1 response regulator AF130997.1.orf0.gene Protein 8e-35 44
SYN_00981 YP_461223.1 response regulator NC_014475.1.orf0.gen Protein 2e-37 44
SYN_00981 YP_461223.1 response regulator CP001918.1.gene5135. Protein 1e-17 43
SYN_00981 YP_461223.1 response regulator AF162694.1.orf4.gene Protein 2e-33 43
SYN_00981 YP_461223.1 response regulator AM180355.1.gene1830. Protein 8e-37 43
SYN_00981 YP_461223.1 response regulator AF155139.2.orf0.gene Protein 8e-37 42
SYN_00981 YP_461223.1 response regulator FJ349556.1.orf0.gene Protein 3e-34 42
SYN_00981 YP_461223.1 response regulator CP004022.1.gene3215. Protein 3e-24 42
SYN_00981 YP_461223.1 response regulator NC_002695.1.916589.p Protein 7e-35 42
SYN_00981 YP_461223.1 response regulator BAC0596 Protein 7e-34 42
SYN_00981 YP_461223.1 response regulator CP000647.1.gene2531. Protein 4e-34 42
SYN_00981 YP_461223.1 response regulator CP000034.1.gene2186. Protein 9e-35 42
SYN_00981 YP_461223.1 response regulator CP001138.1.gene2239. Protein 7e-34 42
SYN_00981 YP_461223.1 response regulator BAC0039 Protein 9e-35 42
SYN_00981 YP_461223.1 response regulator NC_007793.3914065.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_002758.1121390.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_010079.5776364.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_002952.2859858.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_007622.3794948.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_003923.1003417.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_013450.8614146.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_002951.3238224.p0 Protein 2e-33 41
SYN_00981 YP_461223.1 response regulator NC_002695.1.915041.p Protein 3e-22 41
SYN_00981 YP_461223.1 response regulator CP000647.1.gene4257. Protein 9e-23 41
SYN_00981 YP_461223.1 response regulator CP000034.1.gene3834. Protein 3e-22 41
SYN_00981 YP_461223.1 response regulator CP001138.1.gene4273. Protein 2e-22 41
SYN_00981 YP_461223.1 response regulator BAC0533 Protein 9e-23 41
SYN_00981 YP_461223.1 response regulator DQ212986.1.gene4.p01 Protein 5e-37 41
SYN_00981 YP_461223.1 response regulator CP000675.2.gene1535. Protein 1e-27 41
SYN_00981 YP_461223.1 response regulator CP000034.1.gene3671. Protein 3e-32 41
SYN_00981 YP_461223.1 response regulator CP001918.1.gene3444. Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYN_00981 YP_461223.1 response regulator VFG1563 Protein 4e-35 44
SYN_00981 YP_461223.1 response regulator VFG1702 Protein 9e-35 43
SYN_00981 YP_461223.1 response regulator VFG1390 Protein 8e-31 41