|
Name : serS (AYWB_632) Accession : YP_456828.1 Strain : Aster yellows witches'-broom phytoplasma AYWB Genome accession: NC_007716 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 657292 - 658566 bp Length : 1275 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATCTGAATTTTGTAGTCCAAAATCTGCCATCTGTTATTGCAAAATTAGAAAAAAGACAACAAAGTTTTGCTTA TTTAAATAAATTGCCTCTTTTAGCACAACAAAGAAAATCTTTACTTTTGCAAATACAAAATTTAAGAAGTCAAAAAAATC AATCAGCTAAAAAAGTTGCCCAAAAAGCTAATGCTAAAGAAGATATTGCCCTTTTTTTGCAAGAAAATAATTTTTTGCGT GATGATTTACAAAAATTAGAACAAAAGTTAAAACTCCAAGAACAAGAAATTTTTGATATTTTAAGTATTACCCCCAATTT GCCACATGATTCTTTGCCGATTGGCACAGACGATAAAGACAATAAGGAATTGTATTGCGAAGGGCAAATAAGAACCTTTC CATTTACACCTAAAGACCACGTTTATTTAGCAGAAAAACTAGATATTCTGGACTTTAAAAGAGCTTCCAAAATTTCTGGT AGTGGATTTGTCGTTTGTAAAGGGCTAGGAGCACGACTCGAAAGAGCCTTAATTCAATTTATGATGGATCTTCATAGTAA AAAAGGTTATCAAGAAATCATTCCTCCTTATATTATCAATGAAAAATCCATGTTTGCAACAGGTCAATTACCTAAGTTTG AAGATGAAGTCTACAAACTTTACAATTCCAAAAATAATTGGTATTTAAATCCTACAGCAGAAGTTCCTACCATTAATTTG CATCGTGAAGAAATTTTTAAACCAGGTACACTTCCTATTAAATACGTCTCCTACACTACTGCTTTTCGCCAAGAAGCAGG CTCAGCTGGCAAAGATACCCGAGGTATTTTTAGACAACATCAATTTAATAAAGTAGAATTAATCCAGTTTTGCCACCCCC AAAATTCTTATGAATATCTAGAACAAATGTTAAAAGATTCCGAAGAAATACTAAAACTGCTCAAACTTCCTTATCGTGTT GTTTTGCTTTCTACTGGTGATTTGGGTTTTAGTATGTCAAAAACTTATGATTTAGAAGTTTTTTTACCCAGCTATAATTG TTATCGTGAAATTGGTTCTATCAGTAATTCTTGCGATTTCCAAGCAAGACGCGCCAATATTAAAATGAAAAATCCTAAAA ACAACAAAAATGAATACGTTCATATTCTAAACGGTTCAGGTTTGGCTGTTGGAAGAACTGTTATTGCTATTTTAGAAAAT TATCAAAACCAAGATGGCACTATTACAGTTCCTGAAATTTTACAGTCTTATTTAGGAACCGATATTATTAAGTAA Protein sequence : MLDLNFVVQNLPSVIAKLEKRQQSFAYLNKLPLLAQQRKSLLLQIQNLRSQKNQSAKKVAQKANAKEDIALFLQENNFLR DDLQKLEQKLKLQEQEIFDILSITPNLPHDSLPIGTDDKDNKELYCEGQIRTFPFTPKDHVYLAEKLDILDFKRASKISG SGFVVCKGLGARLERALIQFMMDLHSKKGYQEIIPPYIINEKSMFATGQLPKFEDEVYKLYNSKNNWYLNPTAEVPTINL HREEIFKPGTLPIKYVSYTTAFRQEAGSAGKDTRGIFRQHQFNKVELIQFCHPQNSYEYLEQMLKDSEEILKLLKLPYRV VLLSTGDLGFSMSKTYDLEVFLPSYNCYREIGSISNSCDFQARRANIKMKNPKNNKNEYVHILNGSGLAVGRTVIAILEN YQNQDGTITVPEILQSYLGTDIIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-86 | 47 |
