Gene Information

Name : SGP1_0035 (SGP1_0035)
Accession : YP_456147.1
Strain :
Genome accession: NC_007713
Putative virulence/resistance : Virulence
Product : achromobactin ABC transporter ATP-binding component cbrD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 59058 - 59846 bp
Length : 789 bp
Strand : -
Note : -

DNA sequence : 
ATGATGTCGTTTGCCACACGGGCTTTGACGCTTTGCTATCAACGCCAGACCATTATTGAGGATCTGGACATCGTTTTGCC
GCGCGGCAAGGTTTCGGTGCTTATCGGCAGCAATGGCTGCGGCAAGAGTACGCTGCTGAAATCTTTTGCCCGTCTGTTAA
AACCGCAGCAAGGGGCGGTTATTCTCAACGGCACGGATATTTGGCATAAGCCTACCGCCACGGTGGCGCGCGAGCTGGCG
ATCCTGCCGCAGATGCCAAGCGCGCCAGAGGGGATCACCGTGCGGCAACTGGTGAGCCTGGGGCGTTATCCTTATCAGAA
CTGGTTACAGCAGTGGTCGTCGGAAGATGAAGCGATGGTCAACCGCGCGCTACGTCAGACCGGAGTGGAGGCGTTGGCCG
ATCGTCCGGTAGATACGTTGTCCGGTGGTCAGCGCCAGCGGGCGTGGATCGCCATGACATTGGCGCAGGACACCGAGATC
GTGTTGTTGGATGAACCGACTACCTTTCTCGATCTGGCCCATCAGGTCGAGGTGCTGGAACTTTTGCGGGAACTGAATCA
GCGGGAGAATAAGACCATTATTATGGTGTTGCATGACCTGAACCTGGCCTGCCGTTATGCCGACCATCTGGTCGCGGTGC
ATAACCGCACGGTGGTGGCGCAAGGGGAACCGCAGGCGATCCTGACTGAAGAATTGGTGAAGTGTGTGTTCGACCTCAAT
TGCCGGATTATCGAGGATCCTTTCTTCTCCACGCCGCTGTGCATTCCTTTCGGTCGGGAGAGGTCATGA

Protein sequence : 
MMSFATRALTLCYQRQTIIEDLDIVLPRGKVSVLIGSNGCGKSTLLKSFARLLKPQQGAVILNGTDIWHKPTATVARELA
ILPQMPSAPEGITVRQLVSLGRYPYQNWLQQWSSEDEAMVNRALRQTGVEALADRPVDTLSGGQRQRAWIAMTLAQDTEI
VLLDEPTTFLDLAHQVEVLELLRELNQRENKTIIMVLHDLNLACRYADHLVAVHNRTVVAQGEPQAILTEELVKCVFDLN
CRIIEDPFFSTPLCIPFGRERS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-53 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-53 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-52 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-48 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-52 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-52 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-52 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-52 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-44 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-45 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-45 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-45 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGP1_0035 YP_456147.1 achromobactin ABC transporter ATP-binding component cbrD BAC0164 Protein 8e-49 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGP1_0035 YP_456147.1 achromobactin ABC transporter ATP-binding component cbrD VFG0925 Protein 1e-56 53
SGP1_0035 YP_456147.1 achromobactin ABC transporter ATP-binding component cbrD VFG1042 Protein 7e-49 48