Gene Information

Name : SG0563 (SG0563)
Accession : YP_454243.1
Strain : Sodalis glossinidius morsitans
Genome accession: NC_007712
Putative virulence/resistance : Virulence
Product : type III secretion apparatus InvA
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 959067 - 961121 bp
Length : 2055 bp
Strand : +
Note : -

DNA sequence : 
ATGATAAATACACTTTTGTATCAGATTAAATCACGGCCGGAGCTTATTATTCTGGCGATGATGGTACTCGTTATCGTCAT
GCTGATTATTCCCTTACCCACCTATTTGATTGACTTTCTTATAGGGCTTAATTTGACCATGGCGATCCTGATTTTTATGG
GATCATTTTATATTTCCCGGATTCTTGATTTTTCCAGCTTTCCGTCTATATTGCTGGTGACGACGCTGTTTCGTCTGGCA
ATATCGATCAGTACCAGCCGACTGGTATTAATGGATGCAGACGCCGGTGAAATCGTGGCCAGCTTTGGGCAATTTGTGAT
AGGCGATAATCTGGTCGTCGGTTTCGTCATCTTCTTTATTGTTACCGTCGTGCAATTTATCGTCATCACGAAAGGGTCGG
AACGTATTGCCGAAGTGGCGGCGCGGTTCTCCCTGGACGCCATGCCGGGCAAACAAATGAGCATTGATGCCGATTTGAAA
GCAGGCGTGCTGGATGAGGATGGAGTTAAGAAACGCCGCGAAGTCCTGGAAGCGGAAAGTCAATTATACGGCGCGCTTGA
TGGTGCGATGAAATTCATCAAAGGCGATGCCATTGCCGGCATTATCATCATTTTTGTCAACTTGATAGGCGGCATTTCGG
TTGGCATGGTTCAGCACGGTATGGAGCTTTCCGAGGCGCTTACAGTTTACACCCACCTCTCGATTGGTGATGCGTTGGTG
GCGCAAATCCCTGCGCTGCTGATCTCCATCAGCGGCGGGTTTATCGTAACCCGGGTTAACAACAATAAAAACAATAATCT
GGGTTCCAAGATTATTACCGATTTGTTCGCGAACCAGTCAACGCTCATGGTGACCGCCTGTCTGGCGCTGGCGATGGGTT
TTTTACCCGGCTTCCCGTTACCGGTATTCATTGTGCTGTCCGCACTGCTGATTGTGATTTATTTCAAAGACAAATGGAGC
AACCGGAACAAGGTTAAAAGCGGGGAAGGTCATCGCGATAAGACCGCCGATGATGAAGGACAGTCCGAGGCGGTTACCAT
TGACGGCGATATCATCCCGGAAACCTTACCGCTGATGATCACCTTCAATGAGGCGTTCAAGCCGAAGCTGGAGCAGCACA
ATTTATCTTCGCTGCTGAAGAAAAATTTCTTCATTGAGTATGGCGTCAGGCTGCCGGAAATCACTATCGGCTATGCGCCC
AAATCGGCATGTGACTCAATGAGTATTGCTATCAACGAGATCCCCGTCGCCGACTATACGGTAATGCCGGGAATGCATAA
AGTGCTGATCAACGGTGAAGAACTCAAGATGCTGGATAATAGTGTTCAGAGTATCAATACCCCTCAAGGCATAAGTTACT
GGTTGCCGGAAGAAAAAGCGGATAACGCACAGAAAATGGGTTACGTTACCCGCTCTGCTATTGACGAATTCTATTTCTGC
ATCTCCACCTTGCTTACCCATAATATCTCTGAGTTCTTCGGGATTCAGGAAACCAAGATGTTATTGGATGATTTAGAGAA
AAAATACCCCGAGTTGCTAAAAGAAAGCTATCGCAATAATACAGTGCAGCGTATTTCTGAGGTGTTTCAGCGCTTATTGA
AGGAAAGAATATCAATTCGCAACATGAAGCTCATTCTGGAATCTCTGGTGCAATGGGGACCCAAGGAAAAGGACCCGATC
ATGCTGGTAGAGCATGTACGCGGTGCGCTGGGACGTTATATTTGTAATCGTTTTTCTTATCTCGGTAAAATTTGCGCATT
GGTATTTACACATGATATTGAAGAAAAAGTTCGCGGTGGGATCCGGCAAACGTCGGGCGGGAGTTTTATCAATTTAACCC
CGCCCGAGATTGATGAGATTCTGAATTATTTGACGGAATGTCTTAATAAAAATGGTATATCATCCCGTGACATCATTTTA
CTGGTGTCAGTTGATATCAGACGTTTTATTAAAAAGCTGGTGGAAGGGCGTTATCCTGAACTTGAGGTGCTGTCATTTAA
CGAAATGACTGATGGCATCGACATCGACATTATCGCAACTATTCAGACCAATTAA

Protein sequence : 
MINTLLYQIKSRPELIILAMMVLVIVMLIIPLPTYLIDFLIGLNLTMAILIFMGSFYISRILDFSSFPSILLVTTLFRLA
ISISTSRLVLMDADAGEIVASFGQFVIGDNLVVGFVIFFIVTVVQFIVITKGSERIAEVAARFSLDAMPGKQMSIDADLK
AGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGISVGMVQHGMELSEALTVYTHLSIGDALV
AQIPALLISISGGFIVTRVNNNKNNNLGSKIITDLFANQSTLMVTACLALAMGFLPGFPLPVFIVLSALLIVIYFKDKWS
NRNKVKSGEGHRDKTADDEGQSEAVTIDGDIIPETLPLMITFNEAFKPKLEQHNLSSLLKKNFFIEYGVRLPEITIGYAP
KSACDSMSIAINEIPVADYTVMPGMHKVLINGEELKMLDNSVQSINTPQGISYWLPEEKADNAQKMGYVTRSAIDEFYFC
ISTLLTHNISEFFGIQETKMLLDDLEKKYPELLKESYRNNTVQRISEVFQRLLKERISIRNMKLILESLVQWGPKEKDPI
MLVEHVRGALGRYICNRFSYLGKICALVFTHDIEEKVRGGIRQTSGGSFINLTPPEIDEILNYLTECLNKNGISSRDIIL
LVSVDIRRFIKKLVEGRYPELEVLSFNEMTDGIDIDIIATIQTN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaV AAS66840.1 YsaV Not tested SSR-1 Protein 0.0 99
invA YP_217815.1 invasion protein Virulence SPI-1 Protein 5e-166 56
invA NP_457290.1 possible secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-166 56
invA NP_806499.1 virulence-associated secretory protein Virulence SPI-1 Protein 5e-166 56
invA NP_461817.1 needle complex export protein Virulence SPI-1 Protein 5e-166 56
ECs3731 NP_311758.1 EivA Not tested LIM Protein 1e-156 56
invA AAS66860.1 InvA Not tested SSR-2 Protein 2e-137 52
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-88 42
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 4e-93 42
unnamed AAL06368.1 EscV Virulence LEE Protein 2e-91 42
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-88 42
escV AAC31514.1 L0035 Virulence LEE Protein 2e-92 41
escV ACU09459.1 EscV protein Virulence LEE Protein 2e-92 41
escV AAC38382.1 EscV Virulence LEE Protein 5e-93 41
escV NP_290269.1 hypothetical protein Virulence LEE Protein 2e-92 41
escV AAK26714.1 EscV Virulence LEE Protein 4e-93 41
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 2e-92 41
escV AAL57541.1 EscV Virulence LEE Protein 4e-93 41
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 5e-93 41
escV CAI43875.1 EscV protein Virulence LEE Protein 4e-93 41
escV YP_003223476.1 translocator EscV Virulence LEE Protein 5e-93 41
escV CAC81861.1 EscV protein Virulence LEE II Protein 3e-93 41
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 1e-97 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SG0563 YP_454243.1 type III secretion apparatus InvA VFG1780 Protein 3e-170 58
SG0563 YP_454243.1 type III secretion apparatus InvA VFG2461 Protein 7e-165 57
SG0563 YP_454243.1 type III secretion apparatus InvA VFG0557 Protein 2e-166 56
SG0563 YP_454243.1 type III secretion apparatus InvA VFG1006 Protein 6e-150 54
SG0563 YP_454243.1 type III secretion apparatus InvA VFG0384 Protein 4e-106 41
SG0563 YP_454243.1 type III secretion apparatus InvA VFG0813 Protein 1e-92 41
SG0563 YP_454243.1 type III secretion apparatus InvA VFG0729 Protein 3e-93 41
SG0563 YP_454243.1 type III secretion apparatus InvA VFG0064 Protein 1e-109 41