Gene Information

Name : SG1638 (SG1638)
Accession : YP_455318.1
Strain : Sodalis glossinidius morsitans
Genome accession: NC_007712
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2798987 - 2800255 bp
Length : 1269 bp
Strand : +
Note : -

DNA sequence :
ATGAAGCTAAATCCCAGACAGGTACAAACAGCTAAAGCAAAAGAAAAATCTTACAAACTCTCCGACGGGGGAGGAATGTA
TTTGGAGGTTACACCACGAGGTTCAAAGTACTGGCGCATGAAGTATCACCGTCCTAGTGACCGAAAAGAGGATAAATTGT
CCTTTGGGGTCTATCCTGCGATCACCTTGGCTGAAGCTAGAGCTAAACGCGATGAGGCCAAAAAACTTCTCGCGAAAGGT
TTGGATCCTAAGAAGGTGCAAAAAAAGGAGCATGCAGAGAATAATGGAGAGTTTACTTTTGAATCAATTGCTCGAAAATG
GCACTCCAATAACAGACGATGGGAGAACGTAACACGTAACTTGATACTTAATAGTCTTGAGAAATATGTATTCCCAATTA
TCGGTAAAAATGATATACGTCAACTAAAAACTCGCCATCTCCTAGCAGTAGTGAGAGCTGTGGAAGAGAATGGAAAACAC
GAAGTAGCTCAACGTATCCAGCAAAGAATAACGTCAATCATGCGTTATGCAGTACAAAATGAAATCATTGAAACGAACCC
GGCGCTGGATATGGCAGGAGCATTAATTCCTCCCAAAAGTGTTCATCATCCTGCATTAGCACCCATCATGTTACCCCAAT
TCTTTGCACGATTAACTAGTTACAAAGGCCGAAAAATAACTCGCATAGCCGTAGAATTAAATCTATTAACTTTTGTACGA
TCTAGTGAGTTACGTTTTGCTCGTTGGAAAGAAATTGACTTTGAGCATGCGTTATGGGAAATACCAGCCAAACGCGAACC
TATTGCTGGAGTTCGTTATTCTGAACGAGGAATGAAAATGAAATCCTCTCACCTAGTACCGCTCAGTAAGCAGGCAATAG
AATTATTAAAGCAACTTAAAGTACAGCGTGGTGATGAAGCACATATTTTCCCTGGAGACCACGATATTAAAGGTGTTATG
AGTGAAAATACTGTTAACAAAGCTCTTCGCGTTATGGGCTATGATACCAAAACCGAGATTTGTGGGCATGGATTTAGGAC
TATGGCAAGAGGAGCTATGGGTGAGTCGGGTTTATGGGCTGATGATGTAATAGAGCTTCAGATGAGCCATATCGAGCGTA
ACGGGGTCAAGGCCGCTTATCTCCACACCACCAAGCATCTTGAAGAGCGCCGTCTAATGATGCAGTGGTGGGCGGATTAC
CTCGATGCCAACCGAGAGCATTACATATCCCCCTATGATTTCGCCAAGCGCCATGGAAGAGGCGATTAA

Protein sequence :
MKLNPRQVQTAKAKEKSYKLSDGGGMYLEVTPRGSKYWRMKYHRPSDRKEDKLSFGVYPAITLAEARAKRDEAKKLLAKG
LDPKKVQKKEHAENNGEFTFESIARKWHSNNRRWENVTRNLILNSLEKYVFPIIGKNDIRQLKTRHLLAVVRAVEENGKH
EVAQRIQQRITSIMRYAVQNEIIETNPALDMAGALIPPKSVHHPALAPIMLPQFFARLTSYKGRKITRIAVELNLLTFVR
SSELRFARWKEIDFEHALWEIPAKREPIAGVRYSERGMKMKSSHLVPLSKQAIELLKQLKVQRGDEAHIFPGDHDIKGVM
SENTVNKALRVMGYDTKTEICGHGFRTMARGAMGESGLWADDVIELQMSHIERNGVKAAYLHTTKHLEERRLMMQWWADY
LDANREHYISPYDFAKRHGRGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-137 67
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-112 56
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-112 56
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-100 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-112 56
int AAK00456.1 Int Not tested SHI-1 Protein 8e-105 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-114 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-114 56
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-113 56
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-113 56
int CAC81896.1 integrase Not tested LEE II Protein 4e-106 56
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-112 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-112 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-112 55
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-112 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-113 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-113 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-113 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-111 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-113 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-113 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-113 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-112 54
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-107 54
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-107 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-102 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-102 53
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 5e-87 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 9e-74 51
int YP_002346908.1 integrase Not tested HPI Protein 4e-96 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-96 50
int2 NP_993013.1 integrase Not tested HPI Protein 4e-96 50
int CAA08754.1 integrase Not tested HPI Protein 8e-97 50
int CAA21384.1 - Not tested HPI Protein 4e-96 50
int CAB59974.1 integrase Not tested HPI Protein 4e-96 49
unnamed AAD17660.1 unknown Not tested HPI Protein 7e-93 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-85 48
int AAD44730.1 Int Not tested SHI-2 Protein 2e-69 44
int CAC39282.1 integrase Not tested LPA Protein 1e-69 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-69 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-68 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-68 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-68 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-68 43
int ACU09430.1 integrase Not tested LEE Protein 1e-68 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-68 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-68 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-66 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SG1638 YP_455318.1 phage integrase VFG1536 Protein 8e-101 56
SG1638 YP_455318.1 phage integrase VFG0626 Protein 2e-112 55
SG1638 YP_455318.1 phage integrase VFG1693 Protein 7e-113 55
SG1638 YP_455318.1 phage integrase VFG0598 Protein 6e-69 44
SG1638 YP_455318.1 phage integrase VFG0783 Protein 8e-69 43