|
Name : SG1300 (SG1300) Accession : YP_454980.1 Strain : Sodalis glossinidius morsitans Genome accession: NC_007712 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2166415 - 2168472 bp Length : 2058 bp Strand : + Note : with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system DNA sequence : ATGCCGGGGGGCGTAACCAACTGGCTAACGCAAAACCGCTGGCTGGCCGCCTGCCGCGGCAGACAGGATATCATTCTGGC GTTGATGCTGCTTATCGCGATCGTCATGATCGTCCTGCCGCTGCCGACCTTCGTCGTCGATATTCTCATCGCTATCAATA TTACCTTCTCGGTGATATTGCTGCTGATCGCTATATATATCAATGATCCGCTAGATCTGTCCGTTTTCCCTTCACTGTTA CTGATAACGACGCTTTATCGGCTGTCTTTGACGATAAGCACCACCCGGCTGGTCCTGTTGCAGCATAATGCAGGGAGTAT TGTAGATGCATTCGGGCGTTTTGTCGTCGGCGGTAATCTCACGGTCGGGTTGGTTATCTTCTTTATCATTACCATTGTGC AATTCATAGTCATTACCAAGGGCACGGAGCGGGTGGCGGAAGTCAGCGCGCGTTTTTCCCTTGACGGCATGCCCGGCAAA CAGATGAGTATTGACGGCGATTTACGCGCCGGGGTCATTGATGCGGTCCAGGCGCGCCAGCAACGTCAATTGGTACAGCA AGAAAGCCGTTTCCTGGGCGCGATGGACGGCGCGATGAAGTTTGTTAAAGGGGACGCCATCGCCGGCATCATCGTGGTGC TGGTGAATATCATTGGCGGCATCATTATCGGCATCGTGCAGGGTGGCATGAGCATCGGGCAGGCGATGCAGACCTATAGC GTCCTGTCCATCGGCGATGGCCTGTGCGGGCAGATCCCGTCACTGCTGATATCGTTAAGCGCCGGCATCATTGTCACGCG CGTTCCTGGCGAAAAACGGCAGAACCTCGCGGGTGAAGTGTCCACGCAGCTGGGTAAACAGCCGCAGGCGCTGATGCTTA CCGCGGTGATCCTACTGTTATTTGCACTGATACCTGGTTTCCCCTTTATTGACTTTTTCCTGCTGGCGCTGTTGTCCGCG CTGCCTTGCGGGCTTATCTGGCATCGCCTTCGCCGGGCGTCGGGCGTCGGGCCCGCCGCGCAGACGGAGAGCACGGACGA CGTCATGAGGCCTGGGGCTTGTCCGCTGATGCTGCGCATTTCCCCCTCGCTCAATACCGCGTCGTTAACGCAGGAAATTG ATGCGCTACGCTGGAGCCTGTTTGAAAGCTATGGCGTCCCGCTGCCGGAGATAACCGTTATGGTGGAGCCGGCACAGCAG GCGCCGGCAATGACGCTCTTGTTATATCAAGAGCCGGTATTTAGCCAAGTGCTGCCGGATAAGGGGTTCTGTCTGGCGTT TGGCGTGGCGGACGATTTGGGTGGAGAGCGGGTGACCTTGCCGGACGGCATGGGACAGATAACTTGGTTACCTGCGGAAA GGGCGGCGCTGGCGCGCGATCGCGGCCTGACGGTGATAGCGCAGAAAAACTGCTTGTCCGCGCTATTGCGCCGGGTGCTG GTGCGCTATATGGCTGAATTTATCGGTGTACAGGAAGCGCGCTATCTGATGGATGCCATGGAGGCGCATTATGCCGAACT GGTCAAAGAGCTACAGCGCCAGTTGCCCATCAGCAAAATTACCGAAACTCTGCAGCGCCTGGTGGCGGAGGGCGTTTCTA TCCGCGATTTACGTTTGATTTTCGGCACGTTGATTGAATGGGCGCCGCGGGAAAAAGACGTGCTGATGTTGACTGAATAT GTACGCATTGCCCTGCGGCGGCATCTCCTGCAGCGGCTGAAACCGCTTGGAGATCCATTGCCGGTAGTACGTATCGGCGA AGGCATTGAAAACCTAATCCGTGAATCCATACGTCAAACGGCGGTGGGCACCTATGCGGCATTGAGCCCGGCGCAAAACC AACGCATTTTGACCCTGATTGCCGAAGCGCTGGCGCCGCTGGGTGAGGTGTGCGTAGTGACCTCGGTTGACGCGCGCCGT TTCCTGCGCAGGCTCATAGAGACGTTGCGGCACGATATTGCGGTCATGTCCTGGCAGGAGTTGGGGGCGGAATGTGCGAT CCAGGTTCTGGCCACGCTTGATCTGGGGACCGAGGAGCTGGCCGACGATGACATGTAA Protein sequence : MPGGVTNWLTQNRWLAACRGRQDIILALMLLIAIVMIVLPLPTFVVDILIAINITFSVILLLIAIYINDPLDLSVFPSLL LITTLYRLSLTISTTRLVLLQHNAGSIVDAFGRFVVGGNLTVGLVIFFIITIVQFIVITKGTERVAEVSARFSLDGMPGK QMSIDGDLRAGVIDAVQARQQRQLVQQESRFLGAMDGAMKFVKGDAIAGIIVVLVNIIGGIIIGIVQGGMSIGQAMQTYS VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLAGEVSTQLGKQPQALMLTAVILLLFALIPGFPFIDFFLLALLSA LPCGLIWHRLRRASGVGPAAQTESTDDVMRPGACPLMLRISPSLNTASLTQEIDALRWSLFESYGVPLPEITVMVEPAQQ APAMTLLLYQEPVFSQVLPDKGFCLAFGVADDLGGERVTLPDGMGQITWLPAERAALARDRGLTVIAQKNCLSALLRRVL VRYMAEFIGVQEARYLMDAMEAHYAELVKELQRQLPISKITETLQRLVAEGVSIRDLRLIFGTLIEWAPREKDVLMLTEY VRIALRRHLLQRLKPLGDPLPVVRIGEGIENLIRESIRQTAVGTYAALSPAQNQRILTLIAEALAPLGEVCVVTSVDARR FLRRLIETLRHDIAVMSWQELGAECAIQVLATLDLGTEELADDDM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-176 | 69 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-176 | 69 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 3e-177 | 69 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-177 | 69 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 4e-177 | 69 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 1e-135 | 58 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-110 | 49 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-110 | 49 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 9e-111 | 49 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 4e-111 | 49 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 2e-111 | 49 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 2e-111 | 49 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 1e-111 | 49 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 1e-111 | 49 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 1e-111 | 49 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 9e-112 | 49 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-110 | 49 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 1e-110 | 49 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 9e-111 | 49 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 1e-110 | 49 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 9e-111 | 49 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-87 | 43 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 3e-71 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 2e-75 | 41 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 5e-68 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0514 | Protein | 2e-177 | 69 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0729 | Protein | 2e-111 | 49 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0813 | Protein | 5e-111 | 49 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0064 | Protein | 9e-90 | 44 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0198 | Protein | 1e-83 | 43 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG0384 | Protein | 3e-86 | 43 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG2461 | Protein | 3e-74 | 41 |
| SG1300 | YP_454980.1 | secretion system apparatus protein SsaV | VFG2126 | Protein | 2e-72 | 41 |
