Gene Information

Name : XOO_0092 (XOO_0092)
Accession : YP_449121.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Virulence
Product : HrcV protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 97410 - 99347 bp
Length : 1938 bp
Strand : +
Note : HrcV protein (HrpC2 protein); identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGCTAGGAGATCGCGTGCGAGCGACAAGGTATTTCGCTTATAGCGGCGAAGTGGCGATCGCCGCCTTGGTGGTGGCGGT
CATCGGGCTGATGATCCTGCCCCTGCCAACGCCCATGATCGATACGCTACTGGGCATCAACATCACCCTGAGCGTGGTGC
TGTTGATGGTCACGATGTATGTGCCCGACTCGATCTCACTCTCGTCGTTTCCTTCCCTGCTGCTGTTCACCACCCTACTG
CGGTTGTCCTTGAATATCGCCTCGACGAAGTCGATCCTTCTGCATGCCGAGGCGGGCCATATCATCGAGAGCTTTGGCGA
GTTGGTGGTCGGCGGCAATCTGGTGGTGGGCCTGGTCGTTTTCTTGATCATCACCACCGTGCAGTTCATCGTGATCGCAA
AGGGCTCCGAGCGCGTTGCCGAGGTCGGTGCGCGCTTTACGTTGGACGCAATGCCCGGCAAGCAGATGAGTATCGATGCC
GACCTGCGTGGCGGCAACTTGACCGCAGATGAGGCACGCCGCAAACGCGCGCGGCTGGCCATTGAAAGCCAACTGCACGG
CGGCATGGATGGCGCCATGAAATTCGTCAAGGGTGATGCGATCGCCGGCCTGGTGATCACCATGGTCAACATCCTGGCCG
GCATCGTGGTCGGCGTGACGTACCACGGCATGACGGCGGGCGACGCCGCTAACCGCTTTGCGATTCTGTCGGTGGGCGAT
GCCATGGTGTCGCAGATCGCCTCACTGCTGATATCGGTGGCTGCCGGCGTCATGATCACCCGCGTGGCCAATGAAAACGA
GACCAGGCTCAGCTCGCTCGGGCTCGATATCGGCCGTCAGCTCACCAGCAACGCGCGAGCGCTGATGGCAGCGAGCGTGC
TGCTGGCCTGCTTTGCATTCGTCCCTGGCTTTCCGGCCGTGCTGTTCCTGCTGCTGGCAGCGGCCGTCGGCGCCGGCGGC
TATGCGATCTGGCGCAAGCAACGCGACATCAGCGGCAACGATCAGCGCAAGTTGCCTTCGACGAGCCGTAAAGGTGCCAA
AGGCGAGGCGCCACATATTCGCAAAACCGCTCCTGACTTCGCCTCACCGTTGTCGATGCGGCTGTCGCCGCAGCTGGCTG
CTCTGCTCGACCCCGCGCGGCTGGATCAGGCGATCGAAAGCGAGCGCCATCAATTGGTCGAGTTGCTGGGCTTGCCGTTT
CCCGGGATCGCGATATGGCAGAGCGAGTCGCTGCAAGGCATGCAATACGAGGTGTTGATTCACGATGTCCCCGAGACACG
CGCCGAACTGGAGAACACGGAGGACATGCAGGGAGCACTGGCCCGGCAGGCCATCGCGCCCCTGCATGCACGGGCGCACT
TGTTCGTCGGCATCCAGGAGACGCAGTGGATGCTGGAGCAGGTGGCTGCGGACTATCCCGGGCTGGTTGCGGAGGTCAAC
AAGGCGATGCCCGCCCAGCGCATTGCCGATGTGTTGCGGCGTCTACTGGAAGAAAGGATTCCGGTGCGCAATATCAAGAG
CATTCTGGAGAGTCTGGTGGTATGGGGGCCGAAGGAAAAGGATCTTCTGATGTTGACCGAATATGTGCGCTGCGACCTCA
GCCGTTATCTTGCGCATACCGCCACCGCAGGCACCGGGCAGCTGCCCGCAGTGATGCTCGACCACGCTGTCGAACAATTG
ATCAGGCAATCGATTCGCGCGACCGCGGCCGGCAATTTCCTGGCACTTCCGCCCGAGCAGGCGAACCAGCTTGTCGAACA
GGTGGAACGCATCGTTGGCGGTCAGGCGCAGCATCCGATGGCGGTGGTCGCGTCGATGGACGTGCGCAGATATGTACGCC
GCATGATCGAAGCACGGCTGACGTGGCTGCAGGTCTATTCGTTCCAGGAGCTGGGTTCGGAGGTACAGCTGCAGCCGATC
GGTAGAGTGGTGGTGTGA

Protein sequence : 
MLGDRVRATRYFAYSGEVAIAALVVAVIGLMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLL
RLSLNIASTKSILLHAEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDA
DLRGGNLTADEARRKRARLAIESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGD
AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGG
YAIWRKQRDISGNDQRKLPSTSRKGAKGEAPHIRKTAPDFASPLSMRLSPQLAALLDPARLDQAIESERHQLVELLGLPF
PGIAIWQSESLQGMQYEVLIHDVPETRAELENTEDMQGALARQAIAPLHARAHLFVGIQETQWMLEQVAADYPGLVAEVN
KAMPAQRIADVLRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLSRYLAHTATAGTGQLPAVMLDHAVEQL
IRQSIRATAAGNFLALPPEQANQLVEQVERIVGGQAQHPMAVVASMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPI
GRVVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 0.0 100
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 0.0 100
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 0.0 98
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 0.0 95
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 0.0 95
lssD AAO18050.1 LssD Virulence TTSS locus Protein 9e-98 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_0092 YP_449121.1 HrcV protein VFG0064 Protein 2e-103 44
XOO_0092 YP_449121.1 HrcV protein VFG0198 Protein 1e-90 42
XOO_0092 YP_449121.1 HrcV protein VFG0384 Protein 3e-95 41