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Name : XOO_0091 (XOO_0091) Accession : YP_449120.1 Strain : Xanthomonas oryzae MAFF 311018 Genome accession: NC_007705 Putative virulence/resistance : Virulence Product : type III secretion system protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 96337 - 97416 bp Length : 1080 bp Strand : + Note : HrcU protein (HrpC1 protein); identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker DNA sequence : ATGTCGGAAGAAAAAACCGAGAAGCCGACCGAGAAGAAACTGCGGGATGCGCGCAAGGACGGGGAAGTTCCGGTCAGCCC GGACGTCACTGCAGCCGCGGTGCTCTTCGGCGCGTTATTGGTGATGAAATCGGCCGGCGATTACTTCGTCGATCACATGC GCGCATTGACGAGGATCGGCTTCGATTTTTCGGAAAACACACGCGATGCAACGGCGATAAACCGTGCACTCGCCCATATC GGCATCCAGGGATTGCTGTTGATGCTGCCGTTCCTGGCTGCGTGCCTGGTGGCTGGCTTGGTAGGCGGTGCGTTTCAGAC GGGCCTGAACGCCTCGCTCAAGCCGGTGTCGCCCAAGTTCGATTCGCTCAATCCCGCAAACGGGGTCAAGAAACTTTTTT CGTTGAGAAGTCTCATCAATCTACTGAAGTTGATCATCAAGGCCATCCTGATTGGCGTGGTGATGTGGGTCGGTATCCGC ACCCTCATGCCGATGATCATTGGGCTTGCCTACGAGACACCGCTTGACATTTCCCAAATTGCCTGGCGAACCCTGAGCAT GCTCTTCGCACTGGGCGTGCTGCTGTTCATACTGGTCGGCGCTGCAGACTGGAGCGTGCAGCACTGGCTGTTCATCCGCG ACAAGCGAATGAGCAAGGACGAGCAGAAGCGCGAATACAAGGAAAGCGAGGGCGACCCCGAAATCAAGGGCAAACGCAAG GAATTCGCCAAGGAACTGGTCTTCGGCGACCCCCGCCAACGCGTCGCCAAGGCCAAGGTGATGGTGGTCAACCCGACCCA TTACGCGGTGGCATTGGCCTACGAGCCCGATGACTTCGGCTTGCCGCAGGTCGTTGCCAAGGGCGTAGACGATGGCGCGC TGGAACTGCGCGCCTTTGCGCATAACCAGGGCATTCCGATCGTTGCCAATCCGCCACTGGCACGTGCGCTGTATCAGGTG GAATTGGGCGACGCAATCCCTGAGCAATTGTTCGAAACGGTTGCGGTGGTGTTGCGCTGGGTCGATGGACTCGGTCGCGA CCACGGCGACGGCGACGGCAATGGAGCCCTGCCATGCTAG Protein sequence : MSEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGFDFSENTRDATAINRALAHI GIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPKFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIR TLMPMIIGLAYETPLDISQIAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKRK EFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFAHNQGIPIVANPPLARALYQV ELGDAIPEQLFETVAVVLRWVDGLGRDHGDGDGNGALPC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | BAB07858.1 | HrcU | Virulence | Hrp PAI | Protein | 8e-129 | 100 |
| hrcU | YP_198724.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 1e-129 | 99 |
| hrcU | YP_362157.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-121 | 94 |
| hrcU | AAP34345.1 | HrcU | Virulence | Hrp PAI | Protein | 4e-121 | 93 |
| hrcU | NP_640761.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-120 | 92 |
| XC_3012 | YP_244080.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-105 | 83 |
| hrcU | NP_636604.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-105 | 83 |
