Gene Information

Name : XOO_0087 (XOO_0087)
Accession : YP_449116.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Virulence
Product : HrpB4 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 93841 - 94470 bp
Length : 630 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGGACAACACGCGGATCGACAATGCGGCACGATGCGTTCAGCGCTGGACGGACGCGTTGGCGCAACTGGCAGAATCGTT
GGACGCCGCACGGGTGGCGCATTGGCTTGGCCCGGTGGCAGCGTCAGGCTGGGCAGCGGCGCCCGTCTACCGTCGTATGC
GGGTAATCCAGGCGTGGTCAGGATGGTCGGAATTATCGCCGTCTGCGCTCGGCGTGCACGCGAACCAACTTGCCCTGCTG
ATGCCCGCGCGATTGGCCAATGTCCTGATCGCGCGTGCGCTGTTCTCGCGCGGGTTGGCAGTGCGCCGGTGCATCGAGCG
CGAACGTCTGGGCTGGCTCGAACAGTGTGTGGGGCCGGCCGTGCTTGAGCATGTGCGCCAGAACGCGTCGGCCGGCCTCT
CCGTGCCCCTGTTGCCACGCGATGCCGATCAGGCGGCGTGGGTCGGCGACGGTTGGCGTCGGATGCAGGCCGATGGCGTC
TGGTCCAACCCGGTTGTTGCCAAGCTGCTGGCGCTGTCCTTGCCGTTGGGCGCCGCGCAGGTGGCGACCGTTGCAGCAGA
CGGTGCGAGCGCTGCATTCCTGACCGCGCTTCCCACCCTGATGCCGGAGGCGTCATGCGTGTCTGGTTGA

Protein sequence : 
MDNTRIDNAARCVQRWTDALAQLAESLDAARVAHWLGPVAASGWAAAPVYRRMRVIQAWSGWSELSPSALGVHANQLALL
MPARLANVLIARALFSRGLAVRRCIERERLGWLEQCVGPAVLEHVRQNASAGLSVPLLPRDADQAAWVGDGWRRMQADGV
WSNPVVAKLLALSLPLGAAQVATVAADGASAAFLTALPTLMPEASCVSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpB4 YP_198728.1 protein HrpB4 Virulence Hrp PAI Protein 8e-83 100
hrpB4 BAB07854.1 HrpB4 Virulence Hrp PAI Protein 6e-83 100
hrpB4 AAF61283.1 HrpB4 Virulence Hrp PAI Protein 3e-79 99
hrpB4 YP_362161.1 HrpB4 protein Virulence Hrp PAI Protein 1e-79 97
hrpB4 AAB08459.1 HrpB4 Virulence Hrp PAI Protein 7e-80 97
hrpB4 AAP34341.1 HrpB4 Virulence Hrp PAI Protein 3e-78 94
hrpB4 NP_640765.1 HrpB4 protein Virulence Hrp PAI Protein 5e-78 94
XC_3008 YP_244076.1 HrpB4 protein Virulence Hrp PAI Protein 6e-57 68
hrpB4 NP_636608.1 HrpB4 protein Virulence Hrp PAI Protein 6e-57 68