|
Name : xerD (XOO_0764) Accession : YP_449793.1 Strain : Xanthomonas oryzae MAFF 311018 Genome accession: NC_007705 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 822910 - 823881 bp Length : 972 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGTCTGCCAGCAGTCCTGCCGAACGCCGCCAACTCGCCCAGCAGCTACCGCCGCTGCAGGCGGCCGATGCCGGTGTGAT CGAGCGTTTCCTCGACCGGTTTTGGGCCGAGCAAGGCGTGGCGCGGCAGACGCTGGAGAGCTACCGGCGCGATCTGGAAG GGTTGGCGCGCTGGCGCGCCGGCGCCGGCGGCGGTTTGCTCGGCATCGACCGCGTGGCATTGTTCGACTATCTGCGGTGG CGTGCCCAGGCCAATTACTCCCCGCGCAGCACGGCGCGGCTGCTGTCGACCTTGCGTGCGTTCTACGGCTGGTGCCTGCG CGATGGCGTGCGCAGCGACGACCCGACAGCGCTGATCGACCCGCCACAGCTGCCGCGCTCGCTGCCCAAAGCGTTGACTG AAAGTCAGATCGAGGCGCTGCTGGCCGCCCCCGAGGTGGATACTCCTGCGGGCCTGCGCGACCGCGCCATGCTGGAGCTG ATGTACGCCGCGGGCCTGCGTGTGAGCGAGCTGGTCAACCTGCCGGCAGTCGGGGTGAATCTGCGCCAGGGCGTGTTGCG GGTCACCGGCAAGGGCAGCAAGGACCGGCTGGTGCCGCTGGGCGAGGAATCCCAGCATTGGTTGGAACGTTACCTGCGCG AGGCGCGCCCGCTGCTGGCCGCGAACAAGCCGGTGGCGGCGGTGGATGGCCAGGTGCCGTTATTCATCGACGCCGCCCGC CAAGCGCTCAGTCGTCAGCACTTCTGGGCGTTGGTCAAACGCTACGCAGCGGTGGCCGGCATCGACCCGGCGATGGTCAG CCCACATGGGCTGCGCCACAGCTTTGCCACCCATTTGCTCAACCACGGCGCCGACCTGCGCGCGCTGCAGATGCTGTTGG GCCACAGCTCGTTGTCGACCACCCAGATCTATACGCTGGTGGCGCGCCAGCATCTGCAGAAGCTGCACGCCAGCCATCAT CCGCGTGGTTAG Protein sequence : MSASSPAERRQLAQQLPPLQAADAGVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRW RAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLEL MYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAAR QALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHH PRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 2e-56 | 57 |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 2e-56 | 57 |
