|
Name : XOO_4228 (XOO_4228) Accession : YP_453257.1 Strain : Xanthomonas oryzae MAFF 311018 Genome accession: NC_007705 Putative virulence/resistance : Virulence Product : glutamine synthetase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0174 EC number : - Position : 4779910 - 4781319 bp Length : 1410 bp Strand : - Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker DNA sequence : ATGTCCGTGGAAAATGTTGAAAAGCTGATCAAGGACAACAAGGTCGAGTTCGTCGACCTGCGCTTCGTCGATATGCGTGG TGTACAGCAGCACATCACCTTTCCGGCCAATATCATCGAGCCGGCGCTGTTTGAAGAAGGCAAGATGTTCGACGGCAGTT CGATCGCGGGTTGGAAGGGCATCAACGAGTCGGACATGGTGCTGCTGCCGGACGCAGGCACCGCGTATCTGGATCCGTTC TTCGCCGATCCGACCATCGTGCTGACCTGCGACATCCTTGACCCGGCCACCATGCAGAGCTATGAGCGCGATCCGCGCGG CATCGCCAAGCGCGCCGAGGCCTATCTGAAGTCGTCCGGCACCGCCGACCAGGCGTTCTTCGGCCCGGAGCCGGAATTCT TCATCTTCGATTCGGTGCGCTTTGCCAACGACATGGGCCACACCTTCTTCCAGGTGGGTTCGGAAGAAGCGGCCTGGAAT ACCGGTGAAAAGTACGACGGCGGCAATAGCGGCTACCGTCCGGGCGTGAAGGGCGGCTACTTCCCGGTTCCGCCGACCGA CACCCTGCACGACCTGCGCGCGGAAATGATCAAGACGCTGGAACAGGTCGGCATCGAAACCGAAGTGCACCACCACGAAG TGGCCACCGCCGGTCAGTGCGAAATCGGCACCAAGTTCAGCTCGCTGGTGCAGAAGGCCGACGAACTGCTGACGATGAAG TACATCATCAAGAACGTCGCCTACCGCAACGGCAAGACCGCCACCTTCATGCCCAAGCCCATCGTGGGCGACAACGGCTC GGGCATGCACGTGCACCAGTCGCTGGCCAAGGGCGGCGTCAACCTGTTCACCGGCGACGGCTACGGCGGTTTGTCGCAGC TGGCGCTGTGGTACATCGGCGGCATCTTTAAGCACGCCCGCGCGATCAACGCCTTCGCCAACTCCGGCACCAACAGCTAC AAGCGTCTGGTTCCGGGCTTCGAGGCACCAGTGATGCTGGCCTATTCGGCGCGTAACCGCTCGGCGTCGTGCCGTATTCC GTGGGTCACCAACCCGAAGGCGCGCCGCATCGAAATGCGCTTCCCCGATCCGTTGCAGTCCGGCTACCTGACCTTCACCG CGCTGATGATGGCCGGCTTGGACGGCATCAAGAACCAGATCGACCCTGGCGCACCGAGCGACAAGGACCTGTACGACCTG CCGCCGGAAGAAGAGAAGCTGATTCCGCAGGTCTGCTCCAGCCTGGATCAGGCCCTGGACGCGCTGGACAAGGACCGCGA GTTCCTCAAGGCCGGCGGCGTGATGAGCGACGACTTCATCGACGGCTATATCGCGCTGAAGATGCAGGAAGTCACCAAGT TCCGTGCTGCGACCCACCCGTTGGAGTACCAGCTGTACTACGGCAACTGA Protein sequence : MSVENVEKLIKDNKVEFVDLRFVDMRGVQQHITFPANIIEPALFEEGKMFDGSSIAGWKGINESDMVLLPDAGTAYLDPF FADPTIVLTCDILDPATMQSYERDPRGIAKRAEAYLKSSGTADQAFFGPEPEFFIFDSVRFANDMGHTFFQVGSEEAAWN TGEKYDGGNSGYRPGVKGGYFPVPPTDTLHDLRAEMIKTLEQVGIETEVHHHEVATAGQCEIGTKFSSLVQKADELLTMK YIIKNVAYRNGKTATFMPKPIVGDNGSGMHVHQSLAKGGVNLFTGDGYGGLSQLALWYIGGIFKHARAINAFANSGTNSY KRLVPGFEAPVMLAYSARNRSASCRIPWVTNPKARRIEMRFPDPLQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDL PPEEEKLIPQVCSSLDQALDALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glnA | YP_003728749.1 | glutamine synthetase | Not tested | cag PAI | Protein | 3e-106 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XOO_4228 | YP_453257.1 | glutamine synthetase | VFG1399 | Protein | 1e-108 | 51 |
