Gene Information

Name : XOO_4224 (XOO_4224)
Accession : YP_453253.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Virulence
Product : two-component system regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4775083 - 4776510 bp
Length : 1428 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGGCTGAGGCCGCCGCCGTATCCCACATCTGGGTGGTCGACGATGACCGGTCGGTCCGTTTCGTGCTGTCCACCGCCTT
GCGCGATGCCGGTTACGCGGTGGATGGTTTCGACAGCGCTGCCGCCGCGCTGCAGGCGCTCGCCATGCGGCCCACGCCGG
ACCTGCTGTTCACCGACGTGCGCATGCCCGGCGAAGACGGCCTGACCCTGCTCGACAAGCTCAAAGCCAAACACCCGCAA
CTGCCGGTGATCGTGATGTCGGCCTATACCGACGTTGCCAGCACCGCCGGCGCCTTCCGCGGCGGCGCGCATGAGTTCCT
GTCCAAGCCCTTCGACCTGGACGATGCGGTGGCGCTGGCCGCACGCGGGCTGCCGGATGCCGATGCGGGTGCCGACGAAA
TCTTCGCCACCCGGCTGGCCGAAGGCTCGGCCTCGTTGATCGGCGACACGCCCGCTATGCAGGCTTTGTTTCGCGCGATC
GGACGTCTGGCGCAGGCGCCGCTGTCGGTCTTGATCAACGGCGAAACCGGCACCGGTAAAGAGCTGGTCGCCCACGCGCT
GCACAACGAATCGCCGCGCGCGCGCAAACCCTTCGTCGCGCTCAATACCGCCGCCATTCCGGCCGAATTGCTGGAAAGCG
AGTTGTTCGGCCACGAAACCGGCGCCTTTACCGGCGCGACCAAACGGCATATCGGCCGTTTCGAACAAGCCGATGGCGGC
ACGCTGTTTCTGGACGAAATCGGCGACATGCCGTTGCCGCTGCAGACACGCCTGTTGCGCGTGCTGGCAGAGAACGAATT
CTTCCGCGTCGGTGGGCGCGAATTGATCCGCGTCGATGTGCGTGTGATCGCCGCGACCCACCAGGATCTGGAAGCCTTGG
TCCAACAAGGCCGCTTCCGCGCCGATTTGCTACATCGCCTGGATGTGGTGCGCCTGCAATTGCCGCCGCTGCGCGAACGC
CGTGGCGACATCGCGCAACTGGCCGAGAACTTCCTGACCATGGCCGGGCGCAAGCTCGACATGTTGCCCAAGCGGCTGTC
GTCGGCCGCGTTGGAAGACCTGCGTCAATACGACTGGCCCGGCAACGTCCGCGAACTGGAAAACGTGTGCTGGCGTCTGG
CCGCGCTGGCCACCGCCGACATCATCGACGTGGTGGATGTGGAAGCCGCACTGGCACGTGGTGGACGTCGTCACCGCAGC
GGCCGCAGCGACGGCCAGTGGGACGACATGCTCTCCAGCTGGGCCGCACAACGCCTGAGCGAAGGCGCCCAGGGCCTGCA
CGCCGAAGCGCGCGAACGCCTGGACAAAACCCTGCTCGAAGCCGCACTGCAACTCACCCAGGGCCGCCGCGCCGAAGCTG
CCGCCCGCCTGGGCCTGGGCCGTAACACCGTCACCCGCAAACTCGGTCCGGGGCGCAAACCCCGTTAA

Protein sequence : 
MAEAAAVSHIWVVDDDRSVRFVLSTALRDAGYAVDGFDSAAAALQALAMRPTPDLLFTDVRMPGEDGLTLLDKLKAKHPQ
LPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARGLPDADAGADEIFATRLAEGSASLIGDTPAMQALFRAI
GRLAQAPLSVLINGETGTGKELVAHALHNESPRARKPFVALNTAAIPAELLESELFGHETGAFTGATKRHIGRFEQADGG
TLFLDEIGDMPLPLQTRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVQQGRFRADLLHRLDVVRLQLPPLRER
RGDIAQLAENFLTMAGRKLDMLPKRLSSAALEDLRQYDWPGNVRELENVCWRLAALATADIIDVVDVEAALARGGRRHRS
GRSDGQWDDMLSSWAAQRLSEGAQGLHAEARERLDKTLLEAALQLTQGRRAEAAARLGLGRNTVTRKLGPGRKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-52 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_4224 YP_453253.1 two-component system regulatory protein BAC0467 Protein 8e-72 46
XOO_4224 YP_453253.1 two-component system regulatory protein BAC0089 Protein 4e-66 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_4224 YP_453253.1 two-component system regulatory protein VFG1249 Protein 2e-64 45
XOO_4224 YP_453253.1 two-component system regulatory protein VFG0116 Protein 2e-60 44