Gene Information

Name : XOO_3997 (XOO_3997)
Accession : YP_453026.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : site-specific recombinase IntIA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 4505738 - 4506613 bp
Length : 876 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGGATGTGGTCTGGGGGGTTTTCAGGGGCGACCAAATAGAGGTCGAGGCGTTTCTCACCGAACTGGCGACGCGGGGCCA
GGTGTCGGCCGGCACGCAGAATCAGGCGCTGGCGGCACTGCTGTTCCTGTATCGCGAGGTTCTGGGCGTGGAGTTGCCCT
GGATGGAGAATCTGGTGCGCGCCAAGCGGCCGCGGCGCATTCCCGTGGTGCTCTCGGCCGAGGAAGTCGCGCGTTTGCTG
ACGATGCTGGAGGGGTCTTGCCGGCTGATGGCGGGGCTGCTGTACGGCAGCGGGATGCGGCTGCTGGAATGCCTGCGCTT
GCGGATCAAGGACGTGGATGTGGTTCGTGGCGAAATTGTGGTGCGCGTCGGCAAAGGGGGCAAGGATCGGTGGGTGCCGC
TGCCGCACAGTCTGCGTGGGGAATTGATGCAGCAGCGCGAACGGGCGTTGCTGCTGCACGCCGCTGATCTCGCCGAGGGG
GCAGGGCGGGCGTTCCTGCCACACGCGCTGGCGCGCAAGTATCCCAATGCCGATGTCGAGCACGGCTGGCAGTATCTGTT
TCCCGCCGCACCTCGCTCTGTGGATCCGCGCAGTGGGCGCGTTGGTCGGCATCACGTATCGGAAAAAGTCCTGCAGCGTG
CGGTGCAGGCGGCACGGCAACAGGCTGGCCTTGCCAAGCCTGCAACCTGCCACACGTTGCGGCATTCATTCGCAACCCAT
TTGCTGGAGGCCGGCCACGATATCCGCACCGTGCAGGAACTGCTCGGCCACAAGGACGTGGCAACCACACAGATCTATAC
GCATGTGCTGGGACGCGGTGCATCGGTGGTGCGTAGTCCGCTGGACGGGCTCAGCCGTCTTGGTGGCGAGGCGTAA

Protein sequence : 
MDVVWGVFRGDQIEVEAFLTELATRGQVSAGTQNQALAALLFLYREVLGVELPWMENLVRAKRPRRIPVVLSAEEVARLL
TMLEGSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRVGKGGKDRWVPLPHSLRGELMQQRERALLLHAADLAEG
AGRAFLPHALARKYPNADVEHGWQYLFPAAPRSVDPRSGRVGRHHVSEKVLQRAVQAARQQAGLAKPATCHTLRHSFATH
LLEAGHDIRTVQELLGHKDVATTQIYTHVLGRGASVVRSPLDGLSRLGGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-46 55
int1 YP_005160012.1 integrase Not tested Not named Protein 4e-50 55
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-50 55
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-50 55
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-50 55
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-50 55
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-50 55
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-50 55
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-50 55
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-49 55
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 4e-50 55
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 5e-50 55
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-50 55
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-50 55
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-50 55
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-50 55
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-50 55
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-50 55
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-50 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_3997 YP_453026.1 site-specific recombinase IntIA VFG1028 Protein 9e-50 55