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Name : XOO_3254 (XOO_3254) Accession : YP_452283.1 Strain : Xanthomonas oryzae MAFF 311018 Genome accession: NC_007705 Putative virulence/resistance : Unknown Product : type I restriction-modification system endonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 3695045 - 3698224 bp Length : 3180 bp Strand : - Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker DNA sequence : ATGGCTTTTCTATCCGAAGCCGCAGTTGAGCAAGCCCTGCTTGAACAATTACGCAGGTTGGGCTACGCCGTCGTCTCGGA CAACACAACGGGCCCGGACGGCAGCGCGCCGGAACGCGAAAGCCACGATGTCGTGATCCTGCGAAGGCGGCTGGAGGAAG CTGCGTTGCTGCTCAACCCGCAGCTGCCGCCGGAGGCGAGAGAAGACGCCATCCGCAAGCTCACCCAAAACGAATTGCCG AACCTGCTGGAAGAAAACCGCCGCATCCACGCGCTGCTGACCGAAGGCGTGGATGTCGAGTACTACGCAGACGATGGTGT GCTGACGGCGGGCAAGGTTTGGCTGCTCGACTTCGATCGCCCGGAGAATAACGACTGGCTGGCCGTTCAACAGTTTGTGG TCATCAGCGGCCAGGCCAGACGCCGGCCGGACGTGGTGCTGTTCGTCAACGGCCTGCCGCTGGCGGTGATCGAGTTGAAA GCGCCCGGCAGCGCAGGTGCACACCTGGTGGGTGCATTCAACCAGTTGCAGAACTACAAACAGCAGATCCCCGCGTTGTT CCATACCAATGCGGTGTTGGTCACTTCCGATGGCATTGCCTCGCGGGTCGGCTCGCTGTCCGCCGATCTGGAGCGCTTCA TGCCGTGGCGCACCACCGACGGCAAGCAGGTGCTGCCCAATGGGCAGCCGGAGCTGCCTACGCTGATTGAGGGGGTATTC GCGCCACAACGGTTTCTGGAGCTGCTGCGCTGGTTCACCGCCTTCGGCGAAACCGGTGGCGGGCTGGTCAAGATCATTGC CGGTTACCACCAGTTCCATGCGGTCAACCACGCGGTGGAATCGACAATTCGCGCTTCACGCAGCGCCGTTGCCGAAGATC CAGCCAAGTACGGCTCGGCCAGCGTTAAAGCGCAGCCGGCAGGCGACCGCAGGGCGGGGGTGATCTGGCATACGCAGGGT AGTGGCAAGAGTCTGCTGATGGCCTTCTACGCCGGGCGGCTGGTGCAGCACCCGGCGATGCGCAACCCGACGCTGGTGGT GCTGACCGACCGCAACGACCTGGACGACCAGTTGTTCGGCACGTTTTCGATGTGCAAGGCGCTGCTCCGGCAGACACCGG TGCAGGCCGATAGCCGCGAGGATCTGGCGCGCCTGCTGGATCGCGCAAGCGGCGGTGTGATCTTTACCACCTTGCAGAAG TTCGGTGAAGTGGATGCGCCATTGACCGCGCGCCGCAACGTGGTGGTCATTGCCGATGAAGCGCACCGCAGCCAGTACGG CCTGAAAGCCAAACTGGACGCGAAGACCGGCATGGTCTCGTATGGCTTTGCCAAATACATGCGCGATGCGTTGCCCAATG CCTCGTTCATCGGCTTCACCGGCACGCCCATCGAAGCCACCGACGTAAATACCCCCGCGCTGTTCGGCCATTACATCGAT GTCTACGACATCAGCCGCGCGGTGGAAGATGGTGCAACTGTCCCGATCTATTACGAATCGCGGCTGGCGCGCATTGAACT GGATGAAGACGAAAAGCCTCATTTGGATGCAGAGGTCGAGGCCCTGTTCGAGTGGGAAGGCACAGATGAAAAGGAAAAGC TGAAAGGGCGGGCAGCGGCGGTGGAGCGGCTGGTCGGCAGCCAGAAGCGGCTGGCCCTGGTGGCGCAGGACCTGGTAACG CACTTCGAAGAGCGTGTGGCTGCGCTGGATGGCAAGGCGATGGCGGTGTGCATGAGCCGCGAGATCTGCGTTGACCTTTA TAACGAAATCGTCAAGCTGCGCCCGCACTGGCACAGCGACGACGACACGCTGGGCGCGGTCAAGATCGTGATGACCGGCG CGGCCAGCGACCCGCCGCAATGGCAGCAACATATCGGTAACAAGGCCCGGCGAGATGCGTTGGCGCGCCGTGCCAAGGAT CCGGCCGACCCGTTGAAGCTGGTGATCGTGCGCGACATGTGGCTGACCGGCTTCGATGCGCCTTCCATGCACACCATGTA CGTGGACAAGCCGATGAAGGGGCATGGCCTGATGCAGGCCATCGCGCGGGTCAACCGCGTATTTCGGGACAAGCCGGCCG GCTTGATCGTCGACTACATCGGTATCGCCCAGAACTTGAAATCCGCCCTGGCGCAGTATTCGCCCCAGGACAAACAGAAC ACCGGCATCGACGAAGCGCAGGCGATCGCCGTGATGCGGGAGAAGTACGAAGTCGTGCGGGACATGTACCACGGCTTTGA TTACCTCACCGCACTGAATGGCACACCGCAGCAGCGTCTGACGATGATGGCCGGTGCGATCGAGTGGATCCTCGATCAGC AGCAGCAATGGGTAGCCGCGGCAAGCAGCGACGATGGCAAGAAGGCAGCGCAACGGCGTTACCAGGATGCGGTGCTGGCC TTATCCACGGCCTATGCGCTGGCCTCCGCCTCGGATGAGGCGCTTGCAGTGCGTGAGGAGGTGGGCTTCTTCCAGGCGAT CCGCGAAGCCTTGGTCAAAAGCGCGACGGGTTCAGGCATCAACTCGCAGGAGCGCGATTTTGCCATCCGCCAGATCGTGA GCCGTGCGGTGGTCTCCACCGAGATCGTGGATATCCTCAAGGCTGCTGGCATCCAGTCGCCGGACATTTCCATCCTGTCC GACGAATTCCTTGCCGAAGTGCAGCGGATGGACAAGAAGAACCTGGCATTGGAAGCGCTGCGCAAGCTCATCAACGATGG CATCCGTTCGCGTAGCAAGCGCAACATTGTAGAGACCAAGGCATTTTCGGAACGGCTGGAAGACGCGATTGCGCGCTACC ACGCCAATGCCATCACCACTGCCGAAGTCTTGCAGGAACTGATTTGCATCGCCAAGGACATCCGCGCGGCACGTGCGCGT GGCGAAGAGCAGGGGCTGAGCGAGGATGAAGTCGCCTTCTACGATGCGTTGGCAGAGAATGATTCTGCAGTGCAACTGAT GGGAGACGATGCACTCAAGGTCATCGCACACGAGCTGCTGGTGAGCCTAAAGGGCAGCGCCTCGGTGGATTGGGCGCGGC GCGACTCGGCGCGTGCGCGCATGCGTGTGCTGGTGAAGCGCATCCTGCGCAAATACGGCTATCCGCCCGATTTGCAGGAT GCTGCAGTGCGAACGGTGCTGCAGCAGGCAGAGGCACTCTCTGCTGGCTGGTCTGCATGA Protein sequence : MAFLSEAAVEQALLEQLRRLGYAVVSDNTTGPDGSAPERESHDVVILRRRLEEAALLLNPQLPPEAREDAIRKLTQNELP NLLEENRRIHALLTEGVDVEYYADDGVLTAGKVWLLDFDRPENNDWLAVQQFVVISGQARRRPDVVLFVNGLPLAVIELK APGSAGAHLVGAFNQLQNYKQQIPALFHTNAVLVTSDGIASRVGSLSADLERFMPWRTTDGKQVLPNGQPELPTLIEGVF APQRFLELLRWFTAFGETGGGLVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYGSASVKAQPAGDRRAGVIWHTQG SGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDLDDQLFGTFSMCKALLRQTPVQADSREDLARLLDRASGGVIFTTLQK FGEVDAPLTARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPIEATDVNTPALFGHYID VYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFEWEGTDEKEKLKGRAAAVERLVGSQKRLALVAQDLVT HFEERVAALDGKAMAVCMSREICVDLYNEIVKLRPHWHSDDDTLGAVKIVMTGAASDPPQWQQHIGNKARRDALARRAKD PADPLKLVIVRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALAQYSPQDKQN TGIDEAQAIAVMREKYEVVRDMYHGFDYLTALNGTPQQRLTMMAGAIEWILDQQQQWVAAASSDDGKKAAQRRYQDAVLA LSTAYALASASDEALAVREEVGFFQAIREALVKSATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISILS DEFLAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEVLQELICIAKDIRAARAR GEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHELLVSLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQD AAVRTVLQQAEALSAGWSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
