Gene Information

Name : XOO_2963 (XOO_2963)
Accession : YP_451992.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : IS1113 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3328
EC number : -
Position : 3348034 - 3349218 bp
Length : 1185 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence :
ATGCTGGACGAACTGACGTCAGGCTGCAAGACGCCACAGGACGTGGAGAAGCTGTTTTCGCAAATGTTGCAGCACATGAT
CAATCGCTCGTTGGAGGCGGAGATGCAAGCCCATGTGGGCCATGCGCCGCATGGGCGCTCAGGCGGCAACGTGCGCAATG
GCAAGAGCCGCAAGACGGTGCAAAGCGCGTTTGGCGAGTTGCAGATCGAGACCCCGCGCGACCGCGCGGGCACGTTCGCG
CCACAGTTGGTGAAGAAGCGCCAGGTGCGGCTGGCGGGGATGGAGGAGAAGATTCTAGCATTGTACGCGCGCGGCATGAC
CACGCGCGACATCGAGTCTGCGCTGGTGGACGTGTATGGGGTGGAGATATCGCATGCGTTGATCGCACAGGTGACCGACG
CGGTGCTGGAGGAGGCGCGGGCATGGCAATCGAGGCCGCTGGAGCCGATCTATCCGATCGTGTGGCTGGACGGCATCGTG
GTGAAGGTGCAGCACAACAAGCAGGTCATCAACAAGGCCGCGCACGTGGTGCTGGGGGTCAACCTGCGCGGGGAGAAGGA
AGTGCTTGGCCTGTGGTTGGCTGAACACGAGGGCGCCAAATACTGGCTGTCGGTGTTGACCGAACTGCGTCATCGCGGCG
TGCGCGACATCTACATCGCCTGCATGGATGGCTTGAAGGGCCTGCCCGAAGCGGTGCAAGCGGTGTTTCCGCAGACGCTC
ACGCAACTGTGCATTGTGCATTTGGTGCGGGCCAGCCTGCGCTACGTCAACGCAGGCGACAGCAAGGCGGTTGTGGCTGC
GCTCAAGCGCATCTATCAGTCGGCCACGGCGGAAGAAGCGGCGGCGGAACTGGAGGCGCTGGACACGCAGTGGGGCGACA
AATACCGTGCGGTGGTCCGCTTGTGGCGGGGCAACTGGGACAACATCATCCCGTTCTTCCAGTTCGTGCCGCAGATCCGC
AAGGTGATCTACACCACCAATGCCATCGAATCGTTGAACATGGTCATGCGCAAGCTCACCCGCAACCGGCGTATTTTCCC
CAACGACGATTCGGCGCTCAAATCGTTGTTTTTGGCCGTGCGCGAGGCATCGAAGAACTGGCGGTCCATCCATCACTGGA
AACTGGCTCTGCAAAGCTTCCAGGTGATGTTCGGCGAAGAACGCGTGCCGATGAATGCGCTATGA

Protein sequence :
MLDELTSGCKTPQDVEKLFSQMLQHMINRSLEAEMQAHVGHAPHGRSGGNVRNGKSRKTVQSAFGELQIETPRDRAGTFA
PQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEISHALIAQVTDAVLEEARAWQSRPLEPIYPIVWLDGIV
VKVQHNKQVINKAAHVVLGVNLRGEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMDGLKGLPEAVQAVFPQTL
TQLCIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWRGNWDNIIPFFQFVPQIR
KVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREASKNWRSIHHWKLALQSFQVMFGEERVPMNAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api41 CAF28515.1 is285 transposase Not tested YAPI Protein 2e-99 50
tnp7109-31 YP_001800937.1 transposase for insertion sequence Not tested Not named Protein 2e-78 47
CDHC03_2103 YP_005139146.1 transposase-like protein Not tested Not named Protein 2e-79 46
tnp7109-23 YP_001800851.1 transposase for insertion sequence Not tested Not named Protein 1e-79 46
CPR_0630 YP_697957.1 ISCpe3, transposase Not tested Not named Protein 2e-86 44