Gene Information

Name : XOO_0239 (XOO_0239)
Accession : YP_449268.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : ISXoo3 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 264256 - 264741 bp
Length : 486 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker; truncated

DNA sequence :
ATGGACGTCGTGTTCGACCGCACCGCCGAAGGCAGGGCAATCAAATGCCTGGTGATCGTGGACGACACAACCCACGAAGC
GGTCGCCATCGACGTGGAGCGTGCGATCTCGGGACACGGCGTTGTGCGCGTGCTGGATCGGTTGGCACACAGTCGTGGCC
TGCCGAAGGTGATTCGCACGGACAACGGCAAGGAGTTCTGTGGCAAGGCCATGGTCGCCTGGGCGCATGCCAATGGTGTG
CAGCTACGCCAGATCCAGCCTGGCAAGCCGAACCAGAATGCCTACGTCGAATCCTTCAACGGCCGGCTACGCGACGAATG
CCTCAACGAACACTGGTTCCCAACGCTGCTGCATGCGCGCACCGAGATCGAACGCTGGCGCCGCGAATACAACGAACACC
GCCCCAAAAAAACAATCGGCGCAATGACGCCGGCGGCCTATGCCCAGCAGTTGGCCAATAGCGATATCATCACCCCCGGA
CTCTAA

Protein sequence :
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKVIRTDNGKEFCGKAMVAWAHANGV
QLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPG
L

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 8e-41 56
unnamed CAB46578.1 IS1222-like transposase Not tested HPI Protein 3e-35 55
RS13 AAP82958.1 putative transposase Not tested PAPI-2 Protein 8e-32 54