Gene Information

Name : XOO_1999 (XOO_1999)
Accession : YP_451028.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2210008 - 2210856 bp
Length : 849 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker; truncated

DNA sequence :
GTGATCCAGCAGATGATCCAGCAGTGGCAGGAGAAGGCCAGAACCGCCCGGCTGTGCCGGTTGCTGGGGGTGAGTCGTTC
GGGGGTGTATGCGGCGCGCCGACGGCGACCGGCTCCACGCGCTGATGTACTTGCGGCAGCGGTGCAGACGGCCTTCCAGG
CCAGCGGCGGCAACTATGGCAGCCGTCGATTGAGCGCCAGCCTGAAGGCCCAGGGCCTGCCCGCTGGTCGCCACCGGGTC
CGCCGCCTGATGAAGCGCCACGGGCTGAAGGCGCGCTGGAAACGCAAGTTCACCCACACCACCGACAGCCGGCACGACTT
GCCTGTGGCGGCCAACGTTCTGGATCGGCGCTTCAAGCCCAGTGCTGCGGACCAAGCCTGGGTGGCCGACATCACCTACA
TCCGCACCGAGCGCGGCTGGCTGTATCTGGCCGCCGTGCTGGACCTGTACTCGCGCAAGATCGTTGGCTGGGCGATGGCA
CCGAGCATGCCTGCCGAGCTGGTGTGCTGCGCCTTGCAGATGGCCATCGTCCTGCGCCAGCCCAAGCCGGGACTGATCAT
GCATACCGACCGCGGTAGCCAATACGCCAGTCAGGCCCACCGTGATCTGCTGGCCAAGCACAAGCTGGTGGCCAGCATGA
GCCGCAAGGGCAACTGCTGGGACAACGCGGTCATGGAGCGGTTCTTCCTGAACCTGAAAATGGAGCGCGTCTGGCAGCGC
CGCTACGCCAACCCTGCCGAAGCCAGCGCCGACATCACCCACTACATCGTCGCCTTCTACAACACCCGACGGCTGCACTC
CACCCTCGGCTATCGATCACCGGCCGACTACGAGAACGCCGCCGCCTGA

Protein sequence :
MIQQMIQQWQEKARTARLCRLLGVSRSGVYAARRRRPAPRADVLAAAVQTAFQASGGNYGSRRLSASLKAQGLPAGRHRV
RRLMKRHGLKARWKRKFTHTTDSRHDLPVAANVLDRRFKPSAADQAWVADITYIRTERGWLYLAAVLDLYSRKIVGWAMA
PSMPAELVCCALQMAIVLRQPKPGLIMHTDRGSQYASQAHRDLLAKHKLVASMSRKGNCWDNAVMERFFLNLKMERVWQR
RYANPAEASADITHYIVAFYNTRRLHSTLGYRSPADYENAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-47 49
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-47 49
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-47 49
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 7e-44 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 6e-44 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-44 45
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-43 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-43 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-44 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 7e-44 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 7e-44 45
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-42 45
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-42 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 5e-43 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-40 44
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-30 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-40 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-40 42
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-39 42
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 9e-32 41
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 9e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_1999 YP_451028.1 transposase VFG1706 Protein 3e-44 45
XOO_1999 YP_451028.1 transposase VFG1631 Protein 9e-40 42
XOO_1999 YP_451028.1 transposase VFG1484 Protein 5e-32 41