|
Name : XOO_1988 (XOO_1988) Accession : YP_451017.1 Strain : Xanthomonas oryzae MAFF 311018 Genome accession: NC_007705 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 2192781 - 2194130 bp Length : 1350 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGATCCGGCCCTGCTTCGCCAACACCCCGCCGACCTTGCCGAGCGCCTGCGCAGCACGCGCGGTTTCGCACTGGA CACAGCTAAGCTGGAGTCCCTGGAGAGCGAGCGCAAGCATATGCAGGTGCGTACGCAGGAACTGCAGAGCCTTCGCAATT CCAAATCCAAGGCGATCGGGCAGGCTAAGGCCAAGGGCGAGGATGTCGCCGCGCTGATGGCCGAGGTGGCCGGTGTCGGC GATGAACTTTTGCACTCTCATGGCAGACTGACGGTCGTTCAGCACGAGTTGGAAAAGATTTACGCGGTAATTCCCAACCT GCCGCATGCAGACGTGCCTCTTGGGAAAAGTGAGGCTGACAACGTCGAGCAATCGCGTTGGGGCACGCCGCGCCAGTTCG ATTTCCCGGTTAAGGATCATGTGGAGCTTGGGGCGCCCAACGGCTGGCTGGATGGGGAAACCGCAGTCAAGTTGTCGGGT GCACGTTTCACCGTATTGCGCGGTCCGATTGCGCGCCTGCATCGCGCGCTGGCGCAGTTCATGCTTGACCTACACGTCGG TGAGCATGGCTACGAGGAAACCAACGTGCCTCTATTGGTCAATGCTGACTCAATGCGCGGCACAGGGCAGTTGCCAAAAT TCGAGGATGATCTCTTCAGAATTTACGAAAACGAATATGAAGGTCATACCGACGAAGAGACCGGTGAAAGTTTTTATACG CCTACAGGCGGGGTAGATCCCGATCCTGCTTACTATCTCATTCCCACCTCCGAAGTGCCGCTGACCAATATCGTGCGCGA CGAGATCATCGATGCCGAGCGTCTGCCGCTGCGCATGACCGCACATTCGATGTGTTTCCGTGCCGAAGCGGGCAGCGGCG GCCGCGATACGCGCGGCATGATCCGCCAGCACCAATTCGAAAAAGTGGAGCTGGTCACTGCCTGCGCGCCGGAAGACAGC GACGCCGAACATCAGCGCATGACGCGTTGCGCCGAAGTGGTGTTGGAGCAACTCGGCCTGCCGTATCGCAAGGTGTTGCT GTGCACGGGAGATATGGGTTTTTCCGCGATCAAGACCTACGATCTGGAGGTCTGGTTGCCGTCGCAGAACACTTATCGCG AAATTTCGTCGTGCTCCAATTGCGGCGATTTCCAGGCGCGGCGCATGCAGGCGCGCTGGCGCAACCCGGTCAGCGGCAAG CTGGAACTGCTGCACACGCTCAACGGCTCCGGCACTGCTGTGGGCCGCGCGATGATCGCGGTGATGGAGAACTACCAGAA CGCCGATGGGTCGATCGATGTGCCGCAGGTGCTGCGTCCTTACATGGGCGGCATCGAGCGGATCGGCTGA Protein sequence : MLDPALLRQHPADLAERLRSTRGFALDTAKLESLESERKHMQVRTQELQSLRNSKSKAIGQAKAKGEDVAALMAEVAGVG DELLHSHGRLTVVQHELEKIYAVIPNLPHADVPLGKSEADNVEQSRWGTPRQFDFPVKDHVELGAPNGWLDGETAVKLSG ARFTVLRGPIARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFRIYENEYEGHTDEETGESFYT PTGGVDPDPAYYLIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELVTACAPEDS DAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNTYREISSCSNCGDFQARRMQARWRNPVSGK LELLHTLNGSGTAVGRAMIAVMENYQNADGSIDVPQVLRPYMGGIERIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-90 | 50 |
