Gene Information

Name : XOO_1728 (XOO_1728)
Accession : YP_450757.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1910526 - 1910915 bp
Length : 390 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker; truncated

DNA sequence :
ATGAGCAAAGCAATGACGTATTCGCCAGAGGTTCGTGAGCGAGCGGTGCGGATGGTGTTTGAGCACCAGAAGGATCACAC
CTGGCAGTGGGCGACGATCGCATCGATCGCCGGGAAGATCGGTTGCACGGCGCAGACACTCTGCAACGAGGTACGGCAGG
CCGAGTGCGACCAGGGTCGGCGTGAGGGGCTGAGCACGTCCGAGCGCGAGAAGATGAAGTCGCTGGAGCGCGAGGTGCGG
GAGTTGCGGCAGGCCAACGAGATCCTGCGCAAGGCATCAGCGTATCCACCACAGCGACCGTGGCGTGCAATACGTCAGCA
TCCGTTACAGCGAACGGCTGGTCGAGGCCAGGATCGAACCGTCTGTCGGCAGCGTTGGCGACTGGTATGA

Protein sequence :
MSKAMTYSPEVRERAVRMVFEHQKDHTWQWATIASIAGKIGCTAQTLCNEVRQAECDQGRREGLSTSEREKMKSLEREVR
ELRQANEILRKASAYPPQRPWRAIRQHPLQRTAGRGQDRTVCRQRWRLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 1e-18 60
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-15 60
unnamed AAF09023.1 unknown Not tested SHI-O Protein 2e-15 60
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 1e-18 60
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-15 60
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 2e-15 60
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 1e-18 60
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 2e-15 60
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 1e-15 60
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 1e-18 60
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 2e-15 60
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 1e-15 60
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 2e-16 60
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 8e-19 59
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 1e-18 59
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 8e-19 59
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 8e-19 59
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 2e-14 59
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 8e-19 59
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 3e-14 58
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-17 58
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-17 58
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 6e-17 58
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 9e-14 57
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 6e-14 57
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-13 56
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-13 56
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 1e-13 56
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 8e-14 56
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 8e-14 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_1728 YP_450757.1 transposase VFG0643 Protein 5e-16 60
XOO_1728 YP_450757.1 transposase VFG0606 Protein 6e-15 59
XOO_1728 YP_450757.1 transposase VFG1603 Protein 1e-14 58
XOO_1728 YP_450757.1 transposase VFG1717 Protein 3e-14 56