Gene Information

Name : XOO_1166 (XOO_1166)
Accession : YP_450195.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Virulence
Product : amino acid transporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0531
EC number : -
Position : 1273772 - 1275154 bp
Length : 1383 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGACCGACACACCACGCCGCGACGATGCGGCCACGCTGGAACGCTTCGGCTACGCACAAGAGCTCAAGCGGCAGCTCAC
GCTCAAGGATCTGTTGATCTACGGGCTGGTGTCCATGGTGCCGACGGCGCCGTTCTCGATCTTCGGCGGCGTCTTCGACA
TCAGCGCCGGAATGGTGCCGCTGACCTATCTGGTCGGCTTCGTGGCGATGCTGTTCACCGCGCTGAGCTACCAGCAGATG
TCGCAGGCATTTCCGGTGGCTGGCTCGGTGTATGCCTACGTCGGGCGCGGGCTGAACAGCGGCATGGGCTTTCTGGCTGG
TTGGGCGATTCTGCTCGACTATCTGCTGGTACCGACGCTGCTGTATGTGGTCGGCGCCAACGCGATGTACAACGTGGTGC
CGGCAGTGCCGCAGCCGGCGTGGATCGGGTTCTTCGTCGTGCTCAACACGGTGGTCAACCTACGCGGTATCGAAACCACC
GCACGTGCCAATCGCTTTTTTCTGCTTGGCCAGTTGGTGGTATTGGCGGTATTCCTGGTGCTGGCGACGTTGGCGATCCA
GCGCGGCGTCAATGGCGCGCACTGGAGTTGGCGCCCCATCTATGACCCGCAAGCGTTTTCCCCACACGTGATCTTCAGCG
CATTGTCGGTGGCGGTGGTGTCGTTCCTCGGCTTCGATGCGATCTCCACCTTGTCCGAAGAGGCGCGCGGCGGCAACCGT
GTGGTGGGGCGTGCCACCTTGCTCGCGTTGCTGATCGTGGCAGGCGTATTCGTCTTGCAAACCTGGCTGGCGGCATTGCT
GCAACCCACCCTGCAGCGCTACCCCAGTGCGCAAGCATCCAACGATGCGTTCTTCGAGATCGGGCGATTGATCGCCGGGC
CATGGCTGCAGATCGTCATTGCGCTCACGGTCGCCATCAGCGCGGCAATCGCCAATTCGCTGGTGGCACAAGCGGCCACA
TCGCGCCTGTTGTTCGCCATGGCGCGCGACCGCCAGTTGCCGGCCTTCCTGCGCTACATCCACCCGCGTACCGCCGTGCC
GCAGCGTGCGATCTTGCTGGTGGCGGGGCTAAGCATCGTACTGGGCGAAGTGTTCGTCGGCCAAATTGCCTTGCTGTCGT
CGCTGTGCAACGTCGGCGCACTGACTGCCTTCGTGCTGCTGCATATCGCAGTGCTATGGCACTTCCGCGCCCAGGGCCGG
CGCGTGCTGCATGGCCTGGCACCGTTGATCGGCATCGTCATCCTTGCCTACGTATTACTCAATGCCGACACGCATGCGCA
ACTGGGTGGCACCGCGTGGATGGTGGTGGGACTGACGGTACTGGCGTTTCTGAAACTCAGCGGACGTTCTACCGAATTTC
GCGCCAGCGACGCAGTGGAATAG

Protein sequence : 
MTDTPRRDDAATLERFGYAQELKRQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQM
SQAFPVAGSVYAYVGRGLNSGMGFLAGWAILLDYLLVPTLLYVVGANAMYNVVPAVPQPAWIGFFVVLNTVVNLRGIETT
ARANRFFLLGQLVVLAVFLVLATLAIQRGVNGAHWSWRPIYDPQAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNR
VVGRATLLALLIVAGVFVLQTWLAALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAAT
SRLLFAMARDRQLPAFLRYIHPRTAVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTAFVLLHIAVLWHFRAQGR
RVLHGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLTVLAFLKLSGRSTEFRASDAVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1743 NP_456146.1 putative amino acid permease Not tested SPI-2 Protein 9e-64 43
t1247 NP_805052.1 amino acid permease Not tested SPI-2 Protein 9e-64 43
ycjj YP_216387.1 amino acid permease Not tested SPI-2 Protein 5e-63 42
orf48 NP_460344.1 amino acid permease Not tested SPI-2 Protein 5e-63 42
ORF48 CAA68204.1 amino acid permease YeeF like protein Not tested SPI-2 Protein 5e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_1166 YP_450195.1 amino acid transporter VFG0480 Protein 2e-63 42