Gene Information

Name : XOO_1083 (XOO_1083)
Accession : YP_450112.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1182911 - 1183609 bp
Length : 699 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker

DNA sequence : 
ATGCGCATTCTGCTGGTTGAAGACGATCTTTCACTGGGCGAAGGCATCCGCACCGCGCTGCGGCGCGCCGCCTATGCGGT
GGACTGGGTGCATGACGGCGTCAGTGCGTTGATGGCGCTACAGGAGCAGACCATGGATCTGGTCATCCTGGATTTGGGGT
TGCCGCGCATGGATGGCATCGAGGTCATTCGCACCGCACGCGCACGTGCGGTGGACACGCCGATTCTGGTACTCAGCGCA
CGCGAACGTGCAGCCGACCGCGCGCTTGGCCCGGATGTCGGTGCAGACGATTATCTGGGCAAGCCGTTCGACACCAATGA
ACTGTTGGCGCGCACGAGGGCCTTGCTGCGGCGCTCGGCCGGGCGCACGCAGCCTGCATTGCAGGCCGGCGCATTGCGGC
TGGATCCGGCTGGCATGTCGGTGCGCTGGCATGGCCGCGATCTGGATCTGACCCGTCGCGAATTCGCCCTGTTGTGGCTG
CTGATGGAGCAGCGTGGACGACCGATCGGTCGCGAACGCATCCAGCAGCATCTCTATGGATGGGACGAAGACGTCGCCAG
CAATGCGGTGGACGTGCATGTGCACCAGCTGCGTCGCAAGCTGTCGGCAGCCGTGATCCGCACCATTCGCGGTATTGGCT
ATGCACTGGACGAACAGGCCGCACAGGCCGCCGCGGCCCCGCCGCAGGCACCGCAATGA

Protein sequence : 
MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGIEVIRTARARAVDTPILVLSA
RERAADRALGPDVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWL
LMEQRGRPIGRERIQQHLYGWDEDVASNAVDVHVHQLRRKLSAAVIRTIRGIGYALDEQAAQAAAAPPQAPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-31 44
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-25 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_1083 YP_450112.1 hypothetical protein BAC0197 Protein 8e-28 42
XOO_1083 YP_450112.1 hypothetical protein BAC0487 Protein 4e-28 42
XOO_1083 YP_450112.1 hypothetical protein U82965.2.orf14.gene. Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO_1083 YP_450112.1 hypothetical protein VFG1390 Protein 5e-30 43
XOO_1083 YP_450112.1 hypothetical protein VFG0473 Protein 1e-32 43
XOO_1083 YP_450112.1 hypothetical protein VFG0596 Protein 3e-25 41