Gene Information

Name : XOO_1018 (XOO_1018)
Accession : YP_450047.1
Strain : Xanthomonas oryzae MAFF 311018
Genome accession: NC_007705
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1116159 - 1116779 bp
Length : 621 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/Glimmer/GeneHacker; truncated

DNA sequence : 
ATGCCTGAAATCAGGCGTGTGTGGGACGAGAACTTCCAGGTCTATGGTGTGCGTCAGCTCTGGCGGCAGATGCGGCGGGA
GCAGTTCGCTGTTGCGCGCTGCACCGTGCAGCGTCTGATGAAGCGCCAGGGCCTGCGCGGTGTCATCCGCGGCAAGGCGG
TGCGCACGACGGTGAGCGATGCGAAGGCGCCGTGCCCGCTCGATCACGTCAACAGGCAGTTCACTTCGGATCGGCCAAAC
GCGTTGTGGGTCTCGGACTTCACCGATGTGTCGACGTGGCAAGGCTGGATCTGCGTCGCCTTCGTCATCGACGTATTCGC
ACGCCGGATCGTGGGCTGGAAGGCGTCGCCGTCGATGCGGACCGAGCTGGTGCTCGATGCGCTCGAGCAGGCGCTGCATG
CGAGGAAGCCGGTCGGATCGGAGCGTATGATCCACCACAGCGACCGGGGTGTGCAGTACGTCTCGATCCGCTACACCGAG
CGGCTCGCCGAGGCCGGCCTGGAGCCCTCGGTGGGCAGTGTGAGCGACTCGTACGACAACGCACTGGCCGAGACCATCAA
CGGCCTGTGCAAGGCCGAGGTGATCCGACGTCCCCCCATCCTGAGTAGCAGTCTGGTTTAG

Protein sequence : 
MPEIRRVWDENFQVYGVRQLWRQMRREQFAVARCTVQRLMKRQGLRGVIRGKAVRTTVSDAKAPCPLDHVNRQFTSDRPN
ALWVSDFTDVSTWQGWICVAFVIDVFARRIVGWKASPSMRTELVLDALEQALHARKPVGSERMIHHSDRGVQYVSIRYTE
RLAEAGLEPSVGSVSDSYDNALAETINGLCKAEVIRRPPILSSSLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-44 66
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 7e-52 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-43 64
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-40 64
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 64
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 1e-31 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 6e-32 43