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Name : lysS (SRU_0905) Accession : YP_445039.1 Strain : Salinibacter ruber DSM 13855 Genome accession: NC_007677 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1162313 - 1163857 bp Length : 1545 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGTCCCCCGCATCCTCAGAGCTCAGTGAACAGGAACAGCGCCGACGTGAGGAGCGCGACGCGCTCGAACGGCGCGGCAT CGACCCCTACCCCTACGCGTGGGACGTGGATGCCCACGCCGACGAGATCCTCGATACGTTCGACGACGACCTGCATCAGC CGGAGGATGGCGAGGTCGGGGGGTACAAGGTCTCCGTTGCCGGCCGCATCACGGGGCTTCGGGTGATGGGGGGCTCGGCG TTCTTTGACCTCCGGGACGAGACGGGCACGATTCAGGTCTACGTGCGCTCGCAGGACCTGGGCGACGACTTCTACGACGA GGTCTTTACGGAGCTGTTCGACATCGGCGACATCGTGGGCGTCGAGGGGTTCGTCTTCCGGACGGGGATGGGGGAGGTGA CCGTCCGGGCCGCCGACGAATTTCAGTTGCTGGCGAAGGCCCTGCGGCCGTTGCCGGTGGTGAAGGAGACCGAGGAGGAG ACCTATTACGAGGTGACGGACAAGGAATTCCGGTACCGGCAGCGGTACGTCGACCTCGCAGTGAACGAGGACGTGCGGGG CGTCTTTCGGCAGCGGTCCAAGCTCATCTCCACGATGCGCGGCTTTCTGGACGAGCAGGGCTGTTTAGAGGTGGAGACGC CCGTCCTTCAGCCTGTATACGGCGGGGCGTCGGCCGCCCCGTTCGAGACGCACCACAACGCGCTCGACATGCCGCTCTAC CTCCGCATCGCGGACGAGCTGTACCTGAAGCGGCTGTTGGTGGGGGGCTTTGAGGGGGTCTACGAGATCGGGAAGGACTT TCGGAATGAGGGCCTGAGCCGGTTCCACAATCCGGAGTTCACCATGATGGAGTGCTACGTGGCCTACAAGGACTACCGGT GGATGATGGACCTGACGGAGGACCTTCTCCGCACGGCCGCCACTGCGCTGCACGACACGCCCACGGTGGCCTTCGAGGGA CACGAGATCGACTTCGGGGGGGGATGGACACGAATTCCGTTCTTCGAAGCCATCGAGGAGGCGACCGGCTTCGACCTGTA CCGGGCCGGGGCCGATCGGGTCTACGACGTGGCGGCGAACGAACTGGGGCTGGAGGAGGTCGAGGCCGACATGGGCCTTG GCGGGCTCCTCGACGAGATCTTCAGCGAAACGGTGGAGCCGACGCTCGTCCAACCCACCTTCGTGACCGATTATCCGATT GAGCTGAGCCCCCTCGCCAAAAAGCACCGCGAGAAGGAGGGGCTCGTGGAGCGGTTCGAGCTCGTGGTGGCGGGGCGTGA GGTGGCCAACGCCTTTAGCGAGCTCAACGACCCGCAGGATCAGCGCGAGCGGTTTGAGCGGCAGGCGCGCCAACGCGCCG CGGAGGTGGACGATGATGTGGATCCGGAAGACTTGATCGATGAGGATTACCTCCGGGCCCTGGAGTACGGCATGCCGCCT GCGGCCGGGCTGGGCGTCGGCATCGACCGCCTCACCATGATCCTTACTGGGCAGGAGTCGATCCGCGACGTCATTCTCTT CCCCCTGCTCCGCCCCGAGCAGTAG Protein sequence : MSPASSELSEQEQRRREERDALERRGIDPYPYAWDVDAHADEILDTFDDDLHQPEDGEVGGYKVSVAGRITGLRVMGGSA FFDLRDETGTIQVYVRSQDLGDDFYDEVFTELFDIGDIVGVEGFVFRTGMGEVTVRAADEFQLLAKALRPLPVVKETEEE TYYEVTDKEFRYRQRYVDLAVNEDVRGVFRQRSKLISTMRGFLDEQGCLEVETPVLQPVYGGASAAPFETHHNALDMPLY LRIADELYLKRLLVGGFEGVYEIGKDFRNEGLSRFHNPEFTMMECYVAYKDYRWMMDLTEDLLRTAATALHDTPTVAFEG HEIDFGGGWTRIPFFEAIEEATGFDLYRAGADRVYDVAANELGLEEVEADMGLGGLLDEIFSETVEPTLVQPTFVTDYPI ELSPLAKKHREKEGLVERFELVVAGREVANAFSELNDPQDQRERFERQARQRAAEVDDDVDPEDLIDEDYLRALEYGMPP AAGLGVGIDRLTMILTGQESIRDVILFPLLRPEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-77 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_445039.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-77 | 44 |
