|
Name : smpB (SRU_1624) Accession : YP_445744.1 Strain : Salinibacter ruber DSM 13855 Genome accession: NC_007677 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2021495 - 2021959 bp Length : 465 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCTGAAGGCACCGAGGTCGTTGCGCGCAATAAGAAGGCGCAGTTCGAGTACGACATTGAAGAAACCCTGGAGGCGGG GCTCGTCCTGGAGGGGTCCGAGGTCAAATCGGTGCGCCAGGGCAAGGCGAGCCTGGACGGGGCGTACTGTCAGGTCGATC GGGAGGGGGAGATGAAGATCCACGGGATGTACATCAAGCCGTACGAGGAGGCCGGCCCGTTCGGGCACGAACCGCGGCGC AACCGGAAGCTCCTGCTCCACGACCAGCAGATTGGCAAGTGGGGCCAGATGGCCGAGCAGGAGGGCTACACGATTGTCCC GCTGTCGCTCTACTTCCGCGACGGATGGGCAAAGCTAAAGATTGGAATCGCGAAGGGCCGCCAGAAGCACGACAAGCGCC AGGCCATCAAGGAGCGGGAGATGGAGCGCCGACTGGAACGGGAGCAGAGCGACTATAATTTTTAG Protein sequence : MAEGTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGMYIKPYEEAGPFGHEPRR NRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRDGWAKLKIGIAKGRQKHDKRQAIKEREMERRLEREQSDYNF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-30 | 51 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-19 | 45 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 1e-21 | 45 |
