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Name : clpC (SRU_1317) Accession : YP_445441.1 Strain : Salinibacter ruber DSM 13855 Genome accession: NC_007677 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATPase subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1656396 - 1659023 bp Length : 2628 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGGAAGGCAATTTCTCAAATCGCGTCCGGGACGTTATTTCCTACAGCCGCGAAGAGGCGGTGCGACTCGGGCACGATTA CATCGGTACGGAGCACCTCTTGCTTGGGCTCATCCGGGAAGGCGACGGAATCGCGGTGAAGATTCTCCGCAACCTCGGGT GTGACCTGTTGGAGCTCAAGGAGGCCGTGGAGGACACGGTCCGAAGCACCAGCAGCTCCACCTCGGTGGGGAACATCCCC CTTACCAAGCAGGCCGAGAAGGTGCTCAAGATTACGTACCTGGAGGCGAAGCTCTACAAGAGCGACGTCATTGGGACGGA GCACCTCCTCCTGAGCCTGCTCCGGGACGATGAGAACATCGCCGCGCAAATTCTCCAACAAGGCTTTTCAGTAACGTACG ACGCCGTGAGAAACGAGCTAGACTCCATTATTAGTGGCAAGGCCTCTTCCTCTTCCAGCGGCAGCGGTGGATCCGGCGGT CGTCTCTCCTCCGGCTACGGGCAGGAGAGCAGCGAGTCGGAGAACAGCAACACGCCGGTCCTGGACAACTTCGGCCGGGA CCTGACGGAGCTGGCGGAGGAGGATGAACTCGATCCCATCATCGGGCGCGAGGAAGAGATCAAGCGTGTCGCCCAGATCC TGAGCCGACGCAAGAAGAACAACCCGGTTCTCATTGGGGAGCCGGGCGTCGGGAAAACCGCCATCGCGGAGGGGCTTGCC GCGCGGATCGTGGATCGCAAGGTCAGCCGCGTGCTCTACGACAAGCGCATCGTCACGCTCGACCTTGCCTCCCTCGTGGC CGGCACCAAGTACCGGGGCCAGTTCGAGGAGCGGATGAAGGCCGTGATGAAGGAGCTGGAGGACAACGACGACATCATCC TCTTCATCGACGAGATCCACACCATCGTCGGGGCCGGCGGGGCGTCCGGCAGCCTGGACGCGTCGAACATGTTCAAGCCC GCGCTCGCCCGCGGTGACCTGCAGTGCATCGGGGCGACCACGCTCGACGAGTACCGCCAAAACATTGAGGGCGACGGCGC GCTCGACCGCCGCTTTCAAAAGATTATCGTCGACCCGTCGACGCCCGAGGAGACGGTCAACATCCTCTCGAACATCAAGT CCTACTACGAGGACCACCACAACGTCCGCTTCTCTGAGGAGGCGATCGATCTGGCGGTCCAGTTGAGCGACCGCTACATC ACCGATCGCTTCCTGCCGGACAAGGCCATCGACGTGATGGACGAGGCCGGCGCGCGGGTTCACCTCTCCAACATCGAGGT CCCGCCCGAGATTCTGGAGCTTGAGGAGCAGATCGAGGACGTCCAGGAGGAGAAAAACCAGGTCGTCAAGAGCCAGCGGT TCGAAGAGGCGGCCCGCCTCCGCGACAAGGAGAAGACGCTCCAGGAGGAACTGGAGGAGGCCAAGCAGCAGTGGCACGAG CAGGCCGAGACCGAAGTCCACGACGTCACCTCGGAGGAGATCGCCGAAGTGGTGGCCATGATGACGGGCATTCCGGTCGA CAAGATCAGCGAGCCGGAGCAGCAGAAGCTCCTCAAGATGGAGGAGTCGCTCAAGGAGCACGTGGTGGGACAGGACGAAG CCATCGAGAAGCTGTCGAAGGCCATCCGTCGCACCCGTGCCGGCCTGAAGGACCCGGAGAAGCCCATTGGCTCCTTCATT TTCCTCGGGCCCACCGGCGTCGGCAAGACCGAGCTGGCAAAGGTTCTCACCGAGTACCTCTTCGACTCGCAGGAGTCGCT CATCCGGATCGACATGAGCGAGTACATGGAGAAGTTCTCCGTCAGCCGACTCGTGGGGGCCCCGCCGGGATACGTGGGCC ACGAGGAGGGCGGCCAGCTGACCGAGAAGGTGCGCCGGAAGCCGTACTCCGTGGTCCTGCTCGACGAGATTGAGAAGGCC CACCCGGATGTCTCCAACATCCTCCTGCAGGTGCTGGACGATGGGATCTTGACCGACGGCATGGGGCGGGAGGTCGACTT CCGCAATACGATCCTCATCATGACCTCCAACATCGGCACGCAGGACATCAAGTCCTTCGGCCAGGGGATTGGGTTCGACC AGACGGACGGGGAAGACATGGACTATACGTCCATGAAGTCCACCGTTCAGGACGCCCTCAAGAACGTCTTCAACCCGGAG TTCCTGAACCGGCTCGACGACGTGATCGTCTTCAACCCGCTCAACAAGGAGAACATCTTCGACATCATCGACATCATGTC GGAGGATCTCTTCGAGCGCGCCGAGGAGCTTGGCCTCGACCTCGAGTTCGACGAGGCCGCCAAGGAATTCCTAACGGACC GCGGGTTCGACCAGAAGTATGGCGCCCGGCCGCTCCGCAGGGCCCTTCAGAAGTACGTGCAGGACCCGATGGCCGAAGAC ATCCTCCACGACGAGATCACGGAGGGCGACACGGTCCTCATCACGCACGACGGCGAATCGGAGGAGCTGTCCTTCGAGGT CGAGGAGGGCGAGGCCCCGACGGAGGAGACCCCGACAGACGAAAACGGAGAGGCCAACAGCGTCTCCGCCGAAGAGGTTG CCGAGGGCGCGTCCACCGACGAGAACGGATCCGGTGAGGAGCCCTCAACAGCTTCCGATGAGGAGTAG Protein sequence : MEGNFSNRVRDVISYSREEAVRLGHDYIGTEHLLLGLIREGDGIAVKILRNLGCDLLELKEAVEDTVRSTSSSTSVGNIP LTKQAEKVLKITYLEAKLYKSDVIGTEHLLLSLLRDDENIAAQILQQGFSVTYDAVRNELDSIISGKASSSSSGSGGSGG RLSSGYGQESSESENSNTPVLDNFGRDLTELAEEDELDPIIGREEEIKRVAQILSRRKKNNPVLIGEPGVGKTAIAEGLA ARIVDRKVSRVLYDKRIVTLDLASLVAGTKYRGQFEERMKAVMKELEDNDDIILFIDEIHTIVGAGGASGSLDASNMFKP ALARGDLQCIGATTLDEYRQNIEGDGALDRRFQKIIVDPSTPEETVNILSNIKSYYEDHHNVRFSEEAIDLAVQLSDRYI TDRFLPDKAIDVMDEAGARVHLSNIEVPPEILELEEQIEDVQEEKNQVVKSQRFEEAARLRDKEKTLQEELEEAKQQWHE QAETEVHDVTSEEIAEVVAMMTGIPVDKISEPEQQKLLKMEESLKEHVVGQDEAIEKLSKAIRRTRAGLKDPEKPIGSFI FLGPTGVGKTELAKVLTEYLFDSQESLIRIDMSEYMEKFSVSRLVGAPPGYVGHEEGGQLTEKVRRKPYSVVLLDEIEKA HPDVSNILLQVLDDGILTDGMGREVDFRNTILIMTSNIGTQDIKSFGQGIGFDQTDGEDMDYTSMKSTVQDALKNVFNPE FLNRLDDVIVFNPLNKENIFDIIDIMSEDLFERAEELGLDLEFDEAAKEFLTDRGFDQKYGARPLRRALQKYVQDPMAED ILHDEITEGDTVLITHDGESEELSFEVEEGEAPTEETPTDENGEANSVSAEEVAEGASTDENGSGEEPSTASDEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_445441.1 | ATP-dependent Clp protease, ATPase subunit | VFG0079 | Protein | 0.0 | 53 |
| clpC | YP_445441.1 | ATP-dependent Clp protease, ATPase subunit | VFG0080 | Protein | 2e-146 | 52 |
