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Name : SRU_1098 (SRU_1098) Accession : YP_445227.1 Strain : Salinibacter ruber DSM 13855 Genome accession: NC_007677 Putative virulence/resistance : Unknown Product : type i restriction enzyme hindviip m protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 1380683 - 1382251 bp Length : 1569 bp Strand : + Note : identified by match to protein family HMM PF02384 DNA sequence : ATGAGCGAACAGCAGAATCTCTTTGGCCGGAAGCTCCACGCCGACCTCGAAATCGAAGACGAGCTCTGGGAGGCCGCCGT GGATCTCCGGGGCACCATCGCTCCGGCGAACTACAAGAACTATGTCCTGCCGCTTCTCTTCCTCCGGTACCTGTCTCTCC GCTACGAGGAGCGCCGGGAGGAGCTGGAGGAAAAAGCCGAAGATCCGGACTCATACTACGTCGAGGAAGACCTGAGAGAA GTAGATGAGTACCGTCAGGAAGGGGCGTTTCTGATTCCAGAAGAAGCCCGCTGGGACTACCTCGTCGAGCACGCCCAGGA CGACGACATCAAGGTGAAGGTCGATCGCGCAATGGAGCTGTTGCAGCAGCGCTACGACGACCTAGAAGGCGTCCTTCCAC CGATGTATGCCGGGAGCAACTTGACCCAGGAAAACCTTGCCAACCTGATCAACCTGTTCTCCCGGGACATCTTCACCGGC CAGGGCAAGCAGCAGGCCGATGTTCTAGGCCGAGTCTACGAGTACTTTATCACCAACTTTGCCGATACCGAAGGCTCGAA AGGTGGGGAGTTCTTCACCCCGCGATCGGTGGTCCAGGCGCTGGTGGCCATGCTAGAGCCGGAGGATGGCTCGAAGATCT TTGATCCGGCATGTGGGTCTGGCGGGATGTTCGTACAGGCCGCCGAGTTCACCGATGACAAAGAGAGCCTGTCGTTCTAT GGGCAGGAGAGCGTCGACCAAAACCTCCGCCTCTGCAAGATGAACCTGCTCATGCACGACTTGCAGGGGGACTTGGAATC TGGAGACTCCCTTTTGAACGACAAGCATGAGGGCTTGAAGGCGGACTACGTGATCGCCAATCCGCCGTTTAACATCCGGA GTTGGGGCGCAGACGAGATTCCGGGCGATGACCCGCGCCTCCAGGTGGGCGACCGTCGCCTCCAGCCCACGGACTCCAAT GCCAATTACATGTGGATGATGCACTTCCTGCATCACCTGGAGGACGGCGGCACGGCGGGGTACGTGATGGCCAACGGGTC GATGACGACGAGCCTCACGAATGAGGAACCGGTCCGAAAGGCCCTCGTCGACGAGAGGTTTGTGGACTGCATCGTGCAGC TCCCCGATAAGCTCTTTTTCGGCACCGGGATTCCGGCGTGCCTCTGGTTTCTCTCCCGAAACCGGGATGGCTCCAACGGG GAGCGGGAGCGGTCCGACGAAATTCTTTTTCTCGACGGCCGAGATATGGGGGAGCTTCCCGAGCGGGCCAAGCGAGTCCT TACCGACGACGAGATTGGACGGCTGGAGACAGCATACCGCAACTTCCGGATGCCCGATGAAAAGGTCGAGGAAGAGCCGG GCTTTTCCGGTGTGGCCTCACTGGAGGAAGTTCGATCGAACGACTACAAGCTCACACCGGGACTCTACGTCGGCTTCGAG GACGACGATGGGGACCGGGTGCCCTTTGAGGTGAAGATGCCCCAACTCGTCGATGAACTGGAGGATCAGTTTGCTGAATC GGAGCGGCTGCAAAGTCAAATAGAGAAGCAGTTAGCTGACCTACTGTAA Protein sequence : MSEQQNLFGRKLHADLEIEDELWEAAVDLRGTIAPANYKNYVLPLLFLRYLSLRYEERREELEEKAEDPDSYYVEEDLRE VDEYRQEGAFLIPEEARWDYLVEHAQDDDIKVKVDRAMELLQQRYDDLEGVLPPMYAGSNLTQENLANLINLFSRDIFTG QGKQQADVLGRVYEYFITNFADTEGSKGGEFFTPRSVVQALVAMLEPEDGSKIFDPACGSGGMFVQAAEFTDDKESLSFY GQESVDQNLRLCKMNLLMHDLQGDLESGDSLLNDKHEGLKADYVIANPPFNIRSWGADEIPGDDPRLQVGDRRLQPTDSN ANYMWMMHFLHHLEDGGTAGYVMANGSMTTSLTNEEPVRKALVDERFVDCIVQLPDKLFFGTGIPACLWFLSRNRDGSNG ERERSDEILFLDGRDMGELPERAKRVLTDDEIGRLETAYRNFRMPDEKVEEEPGFSGVASLEEVRSNDYKLTPGLYVGFE DDDGDRVPFEVKMPQLVDELEDQFAESERLQSQIEKQLADLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 3e-98 | 45 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 3e-99 | 45 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-97 | 44 |
