Gene Information

Name : BTH_I0642 (BTH_I0642)
Accession : YP_441198.1
Strain :
Genome accession: NC_007651
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 739928 - 740803 bp
Length : 876 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
GTGCGCGAATGCAGACACTGTATAAAAAAACAGTGGTTTATGCAAGCCCGCGTTGCAGGCAGGCATCGCCGCATATTTCG
GAGACAGCCGCGCGCAGCGCCATTGCCGCGGAGCGGCAACCGGTTGCGCATCATGCGAATTCTCATCGCCGAAGACGACA
GCATACTCGCGGACGGCCTCACCCGGTCACTCCGCCAATCGGGCTATGCCGTCGATCACGTGAGGAACGGCGTCGAGGCC
GACACGGCCCTGTCGATGCAGGCTTTCGACCTGCTGATCCTCGATCTCGGCCTGCCCAGAATGCCCGGCCTCGACGTGCT
GCGCCGCCTGCGCGCGCGCAATTCGAACCTGCCCGTGCTGATCCTGACGGCCGCCGACAGCGTCGACGAGCGCGTGAAAG
GGCTCGATCTCGGCGCCGACGACTACATGGCGAAGCCGTTCGCGCTCAACGAGCTCGAGGCGCGCGTGCGCGCGCTGACG
CGGCGCGGCGCGGGCGGCGGGCCGACCGTCGTGCGGCACGGCTCGCTGTCGTTCGACCAGGTCGGCCGGATCGCGTATGC
GAACGACCGCGTGCTCGAGCTGTCCGCGCGCGAGCTCGGCCTGCTCGAAGTGCTGCTGCAGCGGATCGGCCGGCTGGTAT
CGAAGGAGCAGCTCGTCGATCATCTGTGCGAATGGGGCGAGGAAGTCAGCAACAACGCGATCGAGGTCTACGTCCACCGG
CTGCGCAAGAAGATCGAGCCGAGCGGCGTGCGGATCACGACCGTGCGCGGCCTCGGCTACTGCCTCGAGAAGGCGGCGCC
CGCGCCCGCGAGCGACGCGCCGACCGGCGCCGCGCCGCCGCCGGCCGAAGCCGGCGCGAGCCAGTCGCTGCGCTAG

Protein sequence : 
MRECRHCIKKQWFMQARVAGRHRRIFRRQPRAAPLPRSGNRLRIMRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEA
DTALSMQAFDLLILDLGLPRMPGLDVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALT
RRGAGGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHR
LRKKIEPSGVRITTVRGLGYCLEKAAPAPASDAPTGAAPPPAEAGASQSLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0083 Protein 2e-35 45
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0487 Protein 5e-36 44
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0638 Protein 4e-29 44
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0347 Protein 1e-33 43
BTH_I0642 YP_441198.1 DNA-binding response regulator NC_002516.2.879194.p Protein 4e-31 42
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0308 Protein 8e-31 41
BTH_I0642 YP_441198.1 DNA-binding response regulator BAC0197 Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_I0642 YP_441198.1 DNA-binding response regulator VFG1390 Protein 6e-36 44
BTH_I0642 YP_441198.1 DNA-binding response regulator VFG0473 Protein 7e-40 44