|
Name : BTH_I2740 (BTH_I2740) Accession : YP_443254.1 Strain : Genome accession: NC_007651 Putative virulence/resistance : Unknown Product : type I restriction-modification system endonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 3147581 - 3150736 bp Length : 3156 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGGCATTTCTGTCGGAGGCCGCTGTAGAGCAAGCGCTACTTGATCAGCTGCGCGCGCTCGACTACAGCATCGAACGTGA GGAGGACATCGGCCCCGATGGACACCGCCCGGAACGCGAGAGTCACGATGGGGTTGTGCTCAAGAAGCGATTCGAGGACG CTGTTGCTCGTCTCAACCCCGGTCTCCCATTGGAGGCCCGGCAAGACGCCGCGCGCCGTGTGATGCAGTCCGAATTGCCA TCGCTGCTCGAGGAAAACCGCCGCATCCACAAGCTGATGATCGAAGGGGTGGACGTTGAGTACTACGCCGACGACGGCAC TCTGACGGCGGGTAAGGTCGCGCTCATCAACTTCGAACAACCGGAGCAGAACGACTGGCTGGCCGTGAGCCAATTTGTAG TCGTTGCTGGGCATTACAACCGACGTCCCGATGTTGTCGTGTTCGTGAACGGGCTACCGCTCGGCGTGGTCGAGTTAAAG GCACCTGGAAGTGGCAATGCGACCTTGGTCGGGGCTTTCAACCAATTGCAGACCTACAAGAAGCAGATTCCGGCGCTCTT CAATACCAACGCACTGCTGGTGACGTCGGATGGCATTACGGCACGAGTGGGGTCGCTGTCGGCAGACCTCGAGCGCTTCA TGCCATGGCGCACCACCGACGGTACGGACGTCGCACCAAAAGGTGCGCCGGAGCTCTCGACGCTGATCGAGGGCGTGTTC GAGCATCGCCGCCTCCTGGATCTGCTCTGTCATTTCACGGCTTTCGGTGAAACCGGTTCTGGGCTGGCTAAGGTCATTGC GGGCTATCACCAGTTCCACGCGGTGCGACATGCGGTCAACAGTACGGTGGCGGCCTCCTCTCCGGAGGGCAACAAACGAG TCGGCGTGATCTGGCACACGCAAGGTTCCGGAAAAAGCCTGCTGATGGCGTTTTACGCCGGGCAACTCGTCAAACACCCG GCAATGGCCAACCCGACGCTAGTGGTGCTGACCGACCGGAACGATCTTGATGACCAGCTGTTCTCAACGTTTTCGATGTG CCGCGACTTGATCCGGCAGACGCCGGTGCAGGCCGAAAGTCGCGAAGATCTGCAGAAGGTCTTGAGCCGAGCGTCGGGCG GCGTGATTTTTACTACCTTGCAGAAGTTTGGCGAGCTCGCTGAGCCGCTCACCACACGACGTAACGTGGTCGTCATTGCG GATGAAGCGCACCGCAGTCAATACGGCTTCAAGGCCAAGGTGGACACAAAGACCGGCGAAATTTCCTATGGCTTCGCCAA GTACATGCGGGACGCTCTGCCGAACGCATCCTTCATCGGCTTTACAGGCACGCCCATAGAGGCGGACGACGTTAACACCC CGGCGGTATTCGGCAACTACATCGATGTTTACGACATCAGTCGCGCGGTCGAAGACGGTGCGACTGTGCCGATCTACTAC GAGTCTCGGCTGGCACGCATTGAACTCGATGAGGACGAGAAGCCAAAGATCGACGCCGAGGTTGAAGATTTGACCGAGGA AGATTCCGAGGCAGACCAAGAGCGTTTTAAGAAGAAGTGGTCAACGGTCGAAACCCTGGTCGGCAGCGACAAGCGTCTGG CGCTGGTGGCCAAGGACATGGTCGCCCACTTCGACGATCGTGTGGCTGCCCTCGATGGCAAAGCGATGGTGGTGTGTATG AGTCGCCGCATTTGCGTAAAGTTGTACGACGAGATTGTCAAGCTGCGCCCGGACTGGCACAGCGCCGATGACAACGCTGG TGCGATCAAGATCGTGATGACGGGCGCGGCGAGCGATCCGCAAGAGTGGCAGCAGCACATTGGCAACAAGGCACGGCGCG ACCAGCTGGCCAAGCGTGCCCGTGATCCGAAAGACCCGCTCAAACTGGTGATCGTGCGGGATATGTGGCTGACCGGTTTT GACGCACCGTGTATGCACACGATGTACGTGGACAAGCCGATGCATGGGCACGGCTTGATGCAGGCGATAGCACGCGTGAA CCGGGTGTTCCGCGACAAGCCAGCCGGACTGATCGTGGACTACATCGGCATTGCGCAAAACCTGAAGTCGGCCCTGCAGC AGTACTCGAAGAACGATCAGGACAACACCGGCGTCGACGAGGCGCAAGCCATCGCGGTGATGATGGAGAAGTACGAGGTC GTCCGGGACATGTATCACGGCTTCGACTACGCCTCGGCGCTGACCGGGACACCACAGGAGCGTCTGGCGATGATGGCGGG AGCGATCGAGTGGCTTCTCGACTTGCAGCAGAGGCTGGCAGCGAAGGAGAAAACAGAGGGTGGCAAAAAGAACGCTCATC GCCGCTATCAAGATGCAGTGCTCGCGCTGTCCAAGGCGTACTCACTGGCATCGGCATCCGACGAGGCCCGCGAAATTCGG GAGGAAGTTGGCTTCTTCCAGGCTATTCGAGCCGCGTTGGTCAAGAGCGCGACGGGCTCAGGTGTCACCGAGCAAGAGCG CGAGTTGGCCATCCAACAGATCGTGAGCCGCGCAGTGGTCTCGACCGAGATCGTCGACATCCTGGCCGCAGCGGGAATCA AGAGCCCGGACATCTCCATCCTGTCCGACGAGTTTCTCGCGGAGGTTCAGCGGATGGAGCGAAAGAATCTCGCTCTGGAG GCGTTGCGCAAGTTGATCAATGACGGCATCCGCTCGCGGAGCAAAGCTAACGTCGTACAGACCAGGGCATTCTCAGAGCG CTTGGAAGACGCAGTGGCGCGCTATCATGCCAATGCGATCACGACGGCCGAAGTGCTGCAGGAGCTGATCAAATTGGCCA AGGACATCCGGGCTGCCCGTAAGCGGGGCGAGGAGTCAGGGCTATCTGACGAAGAGATCGCTTTCTATGATGCTCTGGCC GAGAATGACAGTGCAGTGCAGATGATGGGCGACGACAAGCTTCGGTTGATCGCTCACGAGCTCTTGGTGAGCCTTAGAGA AAACGTGTCAGTGGATTGGGCTCATCGCGAGTCAGCGCGAGCGCGGATGCGGGTGTTGGTGAAGCGGATTTTGCGAAAAT ATGGCTATCCTCCTGACTTGCAGTATTCCGCCGTGCAGACGGTACTACAACAGGCCGAGGCGCTGTCGTCAGGGTGGGTG TTTTCGCGTGGCGGGGCGACATCACATGGTGACTGA Protein sequence : MAFLSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDGVVLKKRFEDAVARLNPGLPLEARQDAARRVMQSELP SLLEENRRIHKLMIEGVDVEYYADDGTLTAGKVALINFEQPEQNDWLAVSQFVVVAGHYNRRPDVVVFVNGLPLGVVELK APGSGNATLVGAFNQLQTYKKQIPALFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTDVAPKGAPELSTLIEGVF EHRRLLDLLCHFTAFGETGSGLAKVIAGYHQFHAVRHAVNSTVAASSPEGNKRVGVIWHTQGSGKSLLMAFYAGQLVKHP AMANPTLVVLTDRNDLDDQLFSTFSMCRDLIRQTPVQAESREDLQKVLSRASGGVIFTTLQKFGELAEPLTTRRNVVVIA DEAHRSQYGFKAKVDTKTGEISYGFAKYMRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDISRAVEDGATVPIYY ESRLARIELDEDEKPKIDAEVEDLTEEDSEADQERFKKKWSTVETLVGSDKRLALVAKDMVAHFDDRVAALDGKAMVVCM SRRICVKLYDEIVKLRPDWHSADDNAGAIKIVMTGAASDPQEWQQHIGNKARRDQLAKRARDPKDPLKLVIVRDMWLTGF DAPCMHTMYVDKPMHGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQDNTGVDEAQAIAVMMEKYEV VRDMYHGFDYASALTGTPQERLAMMAGAIEWLLDLQQRLAAKEKTEGGKKNAHRRYQDAVLALSKAYSLASASDEAREIR EEVGFFQAIRAALVKSATGSGVTEQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQRMERKNLALE ALRKLINDGIRSRSKANVVQTRAFSERLEDAVARYHANAITTAEVLQELIKLAKDIRAARKRGEESGLSDEEIAFYDALA ENDSAVQMMGDDKLRLIAHELLVSLRENVSVDWAHRESARARMRVLVKRILRKYGYPPDLQYSAVQTVLQQAEALSSGWV FSRGGATSHGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
