Gene Information

Name : BTH_II0840 (BTH_II0840)
Accession : YP_439037.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : type III secretion chaperone BicA
Function : -
COG functional category : S : Function unknown
COG ID : COG1729
EC number : -
Position : 980710 - 981225 bp
Length : 516 bp
Strand : +
Note : identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552

DNA sequence : 
ATGACGCAACGCGACGTGAACATAGACGACATCGAAGCCGACGAGATGGCGGCGGCGCTGCTGGACGCGGTCCAGAACGG
CGCGACGCTAAAGGATCTGCATCAGGTGCCGCAGGACCTGATGGACGGCATCTATGCGTTCGCTTACCGCTTCTACCAGC
AGGGGCGGCTCGACGACGCGGCAGTGTTCTTCCGCTTTCTGTGCATCTACGACTTCTACAACGCCGAATACGCGATGGGG
CTCGCGGCGGTGTGTCAGTTGAAGAAGGAATACGCGCGGGCGATCGATCTGTATGCGCTCGCGTATTCGCTGTCGAAGGA
CGACTACCGGCCGATGTTCCACACCGGCCAATGCCATCTGCTGATGGGCAAGGCGGCGCTCGCGCGCCGCTGCTTCGGCA
TCGTCGCCGAGCGCTCGCGCGACGAGCGCCTCGCGCGCAAGGCGCAATCCTATCTCGACGGGCTCGACGAAGTGGGCGCC
GAAGCGGCGTGCGCATCCGTCGAGAACGACCACTAG

Protein sequence : 
MTQRDVNIDDIEADEMAAALLDAVQNGATLKDLHQVPQDLMDGIYAFAYRFYQQGRLDDAAVFFRFLCIYDFYNAEYAMG
LAAVCQLKKEYARAIDLYALAYSLSKDDYRPMFHTGQCHLLMGKAALARRCFGIVAERSRDERLARKAQSYLDGLDEVGA
EAACASVENDH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 2e-43 65
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 2e-43 65
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 2e-43 65
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 2e-43 65
sycB AAS66850.1 SycB Not tested SSR-1 Protein 1e-36 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II0840 YP_439037.1 type III secretion chaperone BicA VFG2451 Protein 1e-64 95
BTH_II0840 YP_439037.1 type III secretion chaperone BicA VFG0547 Protein 7e-44 65
BTH_II0840 YP_439037.1 type III secretion chaperone BicA VFG0988 Protein 4e-41 55
BTH_II0840 YP_439037.1 type III secretion chaperone BicA VFG1769 Protein 1e-36 52