Gene Information

Name : BTH_II0755 (BTH_II0755)
Accession : YP_438952.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 884771 - 885034 bp
Length : 264 bp
Strand : +
Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403

DNA sequence : 
ATGGAAACCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCCGTCGTGCTCGT
CGCGGCCGCGTCCGGCCTCGCGATCTCGTTCCTGCAGGCGATCACGTCGTTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTGGTCGCGGTGACGGTGACGGTGGCCATCACCGGGCCGTGGGCGGCCGCCGAGATCCTGCACTTCGCGCAGCAGCTG
CTCACTGCGGCGGTGCCGTCATGA

Protein sequence : 
METDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAITGPWAAAEILHFAQQL
LTAAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 2e-16 54
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 2e-16 54
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 2e-16 54
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 2e-16 54
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 2e-16 54
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 1e-16 54
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 4e-14 53
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 4e-14 53
lscS AAO18039.1 LscS Virulence TTSS locus Protein 1e-09 43
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-11 42
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 6e-09 41
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 6e-09 41
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 6e-09 41
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 6e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II0755 YP_438952.1 type III secretion inner membrane protein SctS VFG0395 Protein 5e-10 44
BTH_II0755 YP_438952.1 type III secretion inner membrane protein SctS VFG0187 Protein 3e-05 43
BTH_II0755 YP_438952.1 type III secretion inner membrane protein SctS VFG0043 Protein 8e-11 43