Gene Information

Name : BTH_II0754 (BTH_II0754)
Accession : YP_438951.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 884073 - 884723 bp
Length : 651 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGTTCAGTTTAACGACGTCACCGGCCTCTTGATCGCCGTGCTCGTGATGAGCATGGTGCCGTTCATCGCGATGGTGGT
CACGTCGTACGCGAAGATCGTCGTCGTGCTCGGCCTGCTGCGCAACGCGCTCGGCGTGCAGCAGGTGCCGCCGAACATGG
TGCTCAACGGCATCGCGATCCTCGTGTCGCTGTACATCATGGCGCCGATCGGCTTCGCCGCGCAGCAGCAACTGCAGGGG
CAGGCGCTGTCGCCGCAGCCGACGCAGGCGATGCTGCAGGCGTTCGGCGCGGCGAAGGAGCCGTTCCGCCAGTTCCTCGC
CGCGCACTCGCGCGAGCGCGAGAAGCGCTTTTTCCTGCGCTCCGCGTCGGTGGTCTGGCCGAAGGCGGCGGCCGCGCAAC
TGCGCGAGGACGACCTGATCGTGCTCGCGCCCGCGTTCACGCTCGCGCAGATGACCGACGCGTTCCGCATCGGCTTCATC
CTCTACATCGCGTTCGTCATCGTCGATCTCGTGATCGCGAACGTGCTGATGTCGATGGGGATGAACCAGGTGCAGCCGAC
CAACGTCGCGATCCCGTTCAAGCTGATGCTGTTCGTCGTGATGGACGGCTGGTCGACACTCGTGCACGGCCTCGTGCTGA
CCTATTCCTGA

Protein sequence : 
MVQFNDVTGLLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQQQLQG
QALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKAAAAQLREDDLIVLAPAFTLAQMTDAFRIGFI
LYIAFVIVDLVIANVLMSMGMNQVQPTNVAIPFKLMLFVVMDGWSTLVHGLVLTYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-61 63
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-64 62
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-64 62
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-60 62
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-64 62
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-63 61
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-63 61
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-63 60
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-44 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II0754 YP_438951.1 type III secretion system protein VFG0394 Protein 7e-47 46
BTH_II0754 YP_438951.1 type III secretion system protein VFG0188 Protein 1e-47 46
BTH_II0754 YP_438951.1 type III secretion system protein VFG0044 Protein 4e-42 44