Gene Information

Name : BTH_II0376 (BTH_II0376)
Accession : YP_438576.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator IrlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 446839 - 447531 bp
Length : 693 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGAAGGTCCTGATCGTAGAAGACGAGCCGAAGACGGGCATGTATTTGAAGCGTGGGCTTACGGAGGCGGGTTTCGTCTG
CGACTGGACACAGGACGGCATCAGCGGTCTGCACCAGTTGCAGACGGAGAACTACGATCTCGCGATCCTCGACGTGATGC
TGCCCGGCTGCGACGGATGGACGGTGGTGCGCGAGCTGCGCAGAACGCATCGCACGCCGGTGCTGTTCCTCACCGCGCGC
GATCACGTCGACGATCGCGTGAAAGGCCTCGAACTCGGCGGCGACGACTATCTCGCGAAGCCGTTCGATTTCGCCGAGTT
GCTCGCACGCGTGCGCTCGCTGCTCCGCCGCGGGCAATCAAGCGACGCGCCGGTGCTGCGCGTCGCGAATCTCGAGCTCG
ATCTCGTCCAGCGCAAGGCGCGCCGCCAGGGCAGCACGATTCTGCTCACCTCGAAGGAATTCCTGCTGCTGTGGCTGCTG
ATGCGCCGGCAGGGCGAGATCCTGCCGCGCTCGCTGATCGCCTCGCAAATCTGGGACATCAACTTCGACAGCGATTCGAA
CGTCGTCGATGCGGCGATCAAGCGCGTGCGGGCGAAGGTCGATCAGGACTACGAGCCCAAGCTGATCCACACGGTGCGCG
GAATGGGATATGTTCTCGAGCAGCGGGGCGAGCCGTGCGAATCGTGCGCATGA

Protein sequence : 
MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWTVVRELRRTHRTPVLFLTAR
DHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQSSDAPVLRVANLELDLVQRKARRQGSTILLTSKEFLLLWLL
MRRQGEILPRSLIASQIWDINFDSDSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLEQRGEPCESCA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-57 58
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-56 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0197 Protein 4e-86 73
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0083 Protein 9e-66 62
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0111 Protein 1e-65 62
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0125 Protein 9e-65 59
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0308 Protein 2e-62 59
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0638 Protein 3e-59 58
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR BAC0347 Protein 2e-60 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR VFG0596 Protein 1e-57 58
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR VFG1389 Protein 3e-32 43
BTH_II0376 YP_438576.1 DNA-binding response regulator IrlR VFG1390 Protein 8e-39 42