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Name : pchD (BTH_II1830) Accession : YP_440024.1 Strain : Genome accession: NC_007650 Putative virulence/resistance : Virulence Product : salicyl-AMP ligase Function : - COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism COG ID : COG1021 EC number : 6.3.2.- Position : 2216990 - 2218906 bp Length : 1917 bp Strand : + Note : identified by match to protein family HMM PF00501 DNA sequence : ATGACTTCCTCATCCACCGCCGCCGACTGGCGCACCGATCCGCGCGCCGAGCGGCACGCCGATTCCTATGCCGGCTCACA CGCCGAGTCACACTCCGGCTCGCGCTCCGATTCACGCTCCGATTCACGCTCCGATTCACGCTCCGATTCACGCTCCGATT CGCGCTCCGATTCGCCGACCGTTTCGCCAACCGATTCGCCCGCGGATTCGCCGGCCGCTTCTTCCGCTTCTTCCTCCTCC CCCGCCGCTTCGCCGGCGGTCATGCCGACGGATTCGCCCGCCGCCGCGCGAGCCGGCGCATCGAGCGACGCGCCCGATTG GCCCGACGACTTCGCGCGCCGCTACCGCGACGCCGGCTACTGGCGAGACGAGACCTTCTATGGCGCGCTCGCCGAGCGCG CGCGGCGCAGCCACGCCGCGACCGCATTCGTCGACGGCGAACGCCGCGTGAGTTACCGCGAATTGCTCGAACGCATCCGG CGTCTCGCCGGCGGCTTGCGCCGCCTCGGCCTCGCACGCGGCGACACGGCCGTCGTGCATCTGCCGAACAGCGCGCGCTT CATCGAAGCGTGCTTCGCGCTGTTCCAGCTCGGCGTGCGCCCTGTGCTCGCGCTGCCCGCGCACCGGCAGCACGAGATCG GCGCGTTCTGCCGCTTCACGAACGCCCGCGCGTATCTCGGCGCGGCCCGGCTCGGCGACTTCGACTGCCGTCCGCTCGCG GGCGCGCTGCAGGCGAGCTGTCCGACGCTCGAGCACGTGATCGTCGCGGGCGACGATCACGCGTTCGTGCATTTCGATTC GCTGTACGACGCACCGCCCATCGACGGCTGCGCGGCACGCGCGGACGACATCGCATGCTTTCAGCTATCGGGCGGCACGA CGGGCACGCCGAAGCTGATTCCGCGCCGCCATCGCGAGTACCTGTACAACGTGCGCGCGTGCTCGGACGCGAGCGGCTTC GGCGCCGACACCGTCTATCTCGCCGCGCTGCCGATGGCGCACAACTTCACGCTGTGCTGCCCCGGCGTGATCGGCGCGCT GCTCGCGGGCGGCCGCGTCGTCGCGACCGAGCGCCCCGAGCCGGAGCGCAGCTTCGCGCTGATCGCGCGCGAGCGGATCA CGCATACGGCGCTCGTCCCGCCGCTCGCGCTGCTGTGGCTCGACGAGCAGGCGCAGCGTCAGGCGGACCTGTCGAGCCTG CGCGTGCTGCAGGTCGGCGGCGCGCGGCTGATGGACCACGCGGCCGAACGCGTGACGCCCGTCCTCGGCTGCCGGCTGCA GCAGGTGTTCGGCATGGCCGAAGGCCTCATCTGCTGCACGCGGCTCGACGATCCGCCCGCGCGCATCGCGCGAACGCAAG GCCGGCCGGTGTCGCCCGCCGACGAAGTGCGCATCGTCGACGACGCGGGCCACCCCGTCGCGCCGGGCGAGATCGGCGAA TTGCAGGTGCGCGGGCCGTATACGATCCGCGGCTACTACCGGCTCGCCGAGCACCATGCGGCCGCGTTCACGGCCGACGG TTTCTATCGCAGCGGCGACCGCGTGCGCCGCACCGAAGAAGGCGACCTCGTCGTCGAGGGCCGCGACAAGGACCAGATCA ATCGCGGCGGCGAAAAAGTGTCCGCCGAGGAAGTCGAGAACCTGCTGCTCGCGCATTCGCAAGTTCGCGACGCGGCGGTC GTCGCGATGCCCGATCCGCTGCTCGGCGAACGCACGTGCGCGTTCGTCGTCGCGCGCGCGCCCGCGCCAAGCTCGCTCGC GCTGAAACGGCATTTGCGCGACCAGGGGCTCGCCGCGTTCAAGATCCCCGATCGCATCGAATTCGTGCCGAGCTTTCCGG AAACCGGCATCGGCAAGACCAGCAAGAAATCGCTGCGCGATCTGCTGCGCCGCCAGCTGGCGGCGGCAAACGCATGA Protein sequence : MTSSSTAADWRTDPRAERHADSYAGSHAESHSGSRSDSRSDSRSDSRSDSRSDSRSDSPTVSPTDSPADSPAASSASSSS PAASPAVMPTDSPAAARAGASSDAPDWPDDFARRYRDAGYWRDETFYGALAERARRSHAATAFVDGERRVSYRELLERIR RLAGGLRRLGLARGDTAVVHLPNSARFIEACFALFQLGVRPVLALPAHRQHEIGAFCRFTNARAYLGAARLGDFDCRPLA GALQASCPTLEHVIVAGDDHAFVHFDSLYDAPPIDGCAARADDIACFQLSGGTTGTPKLIPRRHREYLYNVRACSDASGF GADTVYLAALPMAHNFTLCCPGVIGALLAGGRVVATERPEPERSFALIARERITHTALVPPLALLWLDEQAQRQADLSSL RVLQVGGARLMDHAAERVTPVLGCRLQQVFGMAEGLICCTRLDDPPARIARTQGRPVSPADEVRIVDDAGHPVAPGEIGE LQVRGPYTIRGYYRLAEHHAAAFTADGFYRSGDRVRRTEEGDLVVEGRDKDQINRGGEKVSAEEVENLLLAHSQVRDAAV VAMPDPLLGERTCAFVVARAPAPSSLALKRHLRDQGLAAFKIPDRIEFVPSFPETGIGKTSKKSLRDLLRRQLAAANA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| irp5 | YP_002346898.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 2e-100 | 51 |
| ybtE | NP_669710.1 | salicyl-AMP ligase | Virulence | HPI | Protein | 2e-100 | 51 |
| ybtE | NP_993003.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 2e-100 | 51 |
| ybtE | YP_070120.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 2e-100 | 51 |
| ybtE | CAA21394.1 | - | Virulence | HPI | Protein | 2e-100 | 51 |
| ybtE | AAA93464.1 | yersiniabactin 2,3-dihydoxybenzoate-AMP ligase | Virulence | HPI | Protein | 1e-100 | 51 |
| irp5 | CAA73130.1 | Irp5 protein | Virulence | HPI | Protein | 3e-99 | 50 |
| irp5 | YP_001006819.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 3e-99 | 50 |
| ybtE | YP_853079.1 | yersiniabactin siderophore biosynthetic protein | Virulence | PAI IV APEC-O1 | Protein | 2e-100 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pchD | YP_440024.1 | salicyl-AMP ligase | VFG0168 | Protein | 5e-172 | 69 |
| pchD | YP_440024.1 | salicyl-AMP ligase | VFG0932 | Protein | 2e-102 | 46 |
| pchD | YP_440024.1 | salicyl-AMP ligase | VFG1817 | Protein | 7e-89 | 45 |
