Gene Information

Name : BTH_II1376 (BTH_II1376)
Accession : YP_439572.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator IrlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1624297 - 1624986 bp
Length : 690 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGAATACTGATCGTGGAAGACGAGCCGAAGACCGGCATGTATCTGCGCAAGGGGCTGACTGAAGCGGGCTTCATCGC
GGATTGGGTCGAGGACGGCGTGACGGGCCTTCATCAGGCCGAGACCGAGGAGTACGACCTCATCATCCTCGACGTGATGC
TGCCCGGCCACGACGGCTGGACCGTGCTCGAGCGGCTGCGCCGCGAGCGCTCGACGCCCGTTCTGTTTCTGACCGCGCGC
GACGACGTGGGCGACCGCGTGAAGGGGCTCGAGCTCGGCGCGGACGATTACGTCGTCAAGCCGTTCGATTTCGTCGAGCT
GGTCGCGCGCGTGCGCTCGATCCTGCGCCGCGGACAGGGGCGCGAATCGACGATCCTCAAGATCGCCGATCTCGAGCTCG
ACCTGACGCGGCGCAAGGCCACGCGCCAGGGCGACGTCGTGCTGCTGACCGCGAAGGAATTCGCGCTGCTGTGGCTGCTG
ATGCGCCGCGAGGGCGAGATCCTGCCGCGCGCGACGATCGCCTCGCAGGTGTGGGACATGAACTTCAACAGCGATACGAA
CGTCGTCGATGCGGCGATCCGCCGGCTGCGCTCGAAGATCGACGACGCGTACGAGCCGAAGCTGATCCACACGGTGCGCG
GGATGGGCTACGTGCTCGAGGTCAGGAGCGGGAGCGCGCCGAGCCGATGA

Protein sequence : 
MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWTVLERLRRERSTPVLFLTAR
DDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQGRESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLL
MRREGEILPRATIASQVWDMNFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEVRSGSAPSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-58 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-57 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0197 Protein 3e-102 98
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0083 Protein 6e-67 63
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0125 Protein 5e-68 63
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0308 Protein 3e-65 62
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0638 Protein 2e-60 61
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0111 Protein 6e-64 59
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR BAC0347 Protein 6e-59 55
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_003923.1003417.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_013450.8614146.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002951.3238224.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_007793.3914065.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002758.1121390.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_010079.5776364.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002952.2859858.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_007622.3794948.p0 Protein 5e-38 43
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002952.2859905.p0 Protein 4e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_007793.3914279.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_003923.1003749.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002745.1124361.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_009782.5559369.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002951.3237708.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_007622.3794472.p0 Protein 4e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_002758.1121668.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_009641.5332272.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR NC_013450.8614421.p0 Protein 3e-33 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR AE000516.2.gene3505. Protein 6e-29 42
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR AE015929.1.gene1106. Protein 1e-31 41
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR HE999704.1.gene2815. Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR VFG0596 Protein 9e-59 57
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR VFG1386 Protein 9e-36 44
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR VFG1389 Protein 4e-32 44
BTH_II1376 YP_439572.1 DNA-binding response regulator IrlR VFG1390 Protein 2e-35 42