Gene Information

Name : HCH_06448 (HCH_06448)
Accession : YP_437517.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Resistance
Product : lysophospholipase L1 biosynthesis ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 6582629 - 6583309 bp
Length : 681 bp
Strand : +
Note : COG4181

DNA sequence : 
ATGATTGAACTAAACGATCTGACCATGTCCTACGCGCTGGAGAGCAGTCGCGTGAACGTACTATCCGGCGTGGACCTCGC
CATCGCCGATGGTGAAACAGTGGCCATTATAGGGCCATCCGGCTCAGGGAAGACAACCCTGTTGATCCTGCTGGCGGGTC
TGGAGCAACCCGAAAGGGGCGAAATCCGCCTGGACGGAGCGGTCTTGTCGACGCTGAACGCAGACGGTCTGGCGGATATG
CGGCGCGACAAACTCGGTATTATTTTCCAGTCTTTTCATCTGGTTCCCAGCCTTACCGCCCTCGCCAACGTGGCGCTGCC
CCTGGATATCGCCGGACACTCGCAATCCCGCGAGCGGGCGCGCGAGATGCTGGCGAAGGTCGGCCTGGCGCAACGGGAAA
ATCATTACCCGTCGCAATTGTCCGGCGGCGAACAGCAACGGGTCGCCATCGCCCGCGCCCTGGTGCACGCGCCCAAACTG
GTGCTGGCGGACGAACCCACCGGTAATCTTGATCTTCGCACCGGCGAAAAAGTCAGCGATATTCTGTTCGATCTCAATCG
CGAAGCCGGCGCCACTCTGCTGATGGTGACCCACGACGAAGCCATCGCCAAACGCTGCAGCCGGGTGTTGCGTCTGCATG
AGGGCAAGCTGGTGGAGGAGCCTCATGCACTTCCTGCTTGA

Protein sequence : 
MIELNDLTMSYALESSRVNVLSGVDLAIADGETVAIIGPSGSGKTTLLILLAGLEQPERGEIRLDGAVLSTLNADGLADM
RRDKLGIIFQSFHLVPSLTALANVALPLDIAGHSQSRERAREMLAKVGLAQRENHYPSQLSGGEQQRVAIARALVHAPKL
VLADEPTGNLDLRTGEKVSDILFDLNREAGATLLMVTHDEAIAKRCSRVLRLHEGKLVEEPHALPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-39 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-39 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-39 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 44
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 8e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_06448 YP_437517.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_008702.1.4606598. Protein 3e-42 49
HCH_06448 YP_437517.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_012469.1.7686878. Protein 2e-42 45
HCH_06448 YP_437517.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_012469.1.7685735. Protein 4e-40 41