Gene Information

Name : HCH_06374 (HCH_06374)
Accession : YP_437445.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 6512003 - 6512626 bp
Length : 624 bp
Strand : +
Note : COG2003

DNA sequence : 
ATGTTGTATGCGTGCGTCACAGAGACGCGCGAGGTGAAGCCGCCAGTACGGGGCTTCACCCTTGCTGGCTGTTCTTCATG
TTCTTTTGCATACCACATAGAGAGAAGCTACATGAACGAAGATGTACAACAGCACTACTCAATCCACGAAGACGGCTCAT
ACCAATTCAATCAGGCAATACATCCAGACAAAATCATTTCCATTGCAAAACATATCCTTGATGGAAGGTTTTTCCGTGGT
AAAGCATTCTGCGACCCTGACGCGACCAAGTACTATCTCGTGCTCCAGCTCGCAGAACATGAACAAGAAGTATTTGCCTG
CATGTTCCTTGATAACCAGAACCGCCTCATCAGCTTTGAAAAATTGTTCTACGGGACCATTGATCAAGCGTCCGTATATC
CACGAGAAATAGTGAAGCGTGCGCTTATGCTGAATGCAGCAGCAGTGATTCTTGCCCATAACCACCCGAGCGGAATGTCT
GAACCCAGCGTGGCCGATATAGCAATGACAAAGACCGTGAAGAGTTCATTGGCGCTCATCGACGTGCGAGTGCTTGATCA
TATTGTGGTTGGAAGCGACGGAAGTTCCGTGAGTTTTATAGAGAGAGGCTATATGGCAGGGTAA

Protein sequence : 
MLYACVTETREVKPPVRGFTLAGCSSCSFAYHIERSYMNEDVQQHYSIHEDGSYQFNQAIHPDKIISIAKHILDGRFFRG
KAFCDPDATKYYLVLQLAEHEQEVFACMFLDNQNRLISFEKLFYGTIDQASVYPREIVKRALMLNAAAVILAHNHPSGMS
EPSVADIAMTKTVKSSLALIDVRVLDHIVVGSDGSSVSFIERGYMAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-30 56
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 52
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-33 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-28 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_06374 YP_437445.1 DNA repair protein VFG1119 Protein 7e-33 52