Gene Information

Name : HCH_05925 (HCH_05925)
Accession : YP_437000.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : sigma 54-dependent transcriptional activator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 6055503 - 6056861 bp
Length : 1359 bp
Strand : +
Note : Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204

DNA sequence : 
ATGATAAAAAAAGTACTCATTGTCGACGACGAACCCGATATCCGCGCATTACTGGAAATCACTTTAAGCCGCATGCAGAT
AGAAACACGGGCGGCGGAAAATATCACGCAGGCCAAACAACTATTAAGCGAAGAGAGCTTTAGCCTTGTACTGACTGACA
TGAATATGCCGGACGGCAATGGCATCGACCTTGTCGCCCATATCCAGAAGCAATCATCCAATACGCCTGTAGCGGTCATT
ACAGCTTATGGCAGTATAGACACGGCGATTTCTGCGCTTAAAGCCGGCGCCTTCGACTTTGTCTCCAAGCCTGTAGATCT
TGCGCGCCTGCGTGAGCTGGTTAACAGCGCATTGAAACTGCCAAAAAATGACGCCCCCAAAGCAACCCCTCAAGTAACCC
AATTGCTCGGCGAATCATCCACGATGGATAAGCTACGCGGGCAAATCAGAAAACTCGCGCGCAGCCAGGCGCCTATCTAT
ATCAGCGGCGAGTCAGGCAGCGGCAAAGAAATGGTCGCCAAATCGATCCATGAACAGGGGCCTCGCAGCGAAGGGCCCTT
TGTGCCAGTCAACTGTGGCGCTATACCCAGCGAGCTGATGGAGAGCGAATTCTTTGGCCACAAGAAAGGTGCGTTTACCG
GCGCTGTTGAAAATAAAGTGGGGTTATTTCAAGCTGCGAATGGCGGGACCCTGTTTCTCGACGAAGTCGCCGATTTACCG
CTGACGATGCAGGTTAAACTTCTCCGCGCCATTCAGGAAAAAGCAGTTCGTCCAGTCGGTGAACAGAAGGAGATCCCCAT
TGATGTACGCATACTCTCCGCCACCCATAAAGATTTGCACAGCGAAGTAGATGAAGGCCGGTTCCGTCAGGACCTTTTTT
ATCGAATAAATGTCATCGAGCTGAGAGTCCCAAGCTTACGCCAACGCAAAGAAGACATCCCCCTTCTCGCTAATCATTTC
CTTAAACAATTAGCGGACGAATGTGAGATCCCCAACGCATCAATTAGCAAGTCAGCGATGCAGAAACTGGAGTCTTATTA
TTTTCCAGGCAACGTTCGCGAACTGGAAAATATTATGGAGCGCGCTTTTACCCTGTGCGAAGACGATGTCATTAACGAAG
AGGACATCCATCTGCCTAAAACAGATACCGAGGGTTTAACATCCGACTCAATGGAGCTGGATGTTCCTGAGTTCGACGAG
AACAAAGTTAACCTTGAACACTTTCTCGAAAACATCGAAAAGCAAGCTATTGAGAAAGCCCTTGAAGAAACACGATGGAA
TAAAACGGCTGCCGCCAAGAAGCTGGGCATCAGCTTTCGAGCCCTTCGCTACCGCCTGAAAAAGCTGGGGATGGAGTAA

Protein sequence : 
MIKKVLIVDDEPDIRALLEITLSRMQIETRAAENITQAKQLLSEESFSLVLTDMNMPDGNGIDLVAHIQKQSSNTPVAVI
TAYGSIDTAISALKAGAFDFVSKPVDLARLRELVNSALKLPKNDAPKATPQVTQLLGESSTMDKLRGQIRKLARSQAPIY
ISGESGSGKEMVAKSIHEQGPRSEGPFVPVNCGAIPSELMESEFFGHKKGAFTGAVENKVGLFQAANGGTLFLDEVADLP
LTMQVKLLRAIQEKAVRPVGEQKEIPIDVRILSATHKDLHSEVDEGRFRQDLFYRINVIELRVPSLRQRKEDIPLLANHF
LKQLADECEIPNASISKSAMQKLESYYFPGNVRELENIMERAFTLCEDDVINEEDIHLPKTDTEGLTSDSMELDVPEFDE
NKVNLEHFLENIEKQAIEKALEETRWNKTAAAKKLGISFRALRYRLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-111 52
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-111 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_05925 YP_437000.1 sigma 54-dependent transcriptional activator BAC0089 Protein 3e-78 43
HCH_05925 YP_437000.1 sigma 54-dependent transcriptional activator BAC0467 Protein 2e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_05925 YP_437000.1 sigma 54-dependent transcriptional activator VFG1214 Protein 1e-148 66