Gene Information

Name : HCH_00579 (HCH_00579)
Accession : YP_431907.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 589711 - 590391 bp
Length : 681 bp
Strand : +
Note : COG0745

DNA sequence : 
ATGCGAGTTTTAGTTATTGAAGACGATAAAGATGTAGCTGCCTATCTGAGTAAGGGACTCAAAGAAAGCGGATATGTGGT
GGACGCCACTGACAACGGAAAAACCGGCCTGCATATGGCCACAACCGAAAGTTATGATCTGCTTCTTGTGGATCGCATGC
TGCCGGAGCTGGATGGTTTGTCCGTCGTGCGCATGTTGCGCGCGGGCGGCTCCAAAACCCCGGTACTGGTGCTGAGCGCG
CTTGGCGAAGTCGACGATCGTGTCCAAGGTTTGCGCGCCGGCGGCGACGATTATCTGGTTAAACCCTTCTCTTTCAGCGA
GTTATTGGCGCGTATCGAAGCTTTGCTGCGTCGTTCCCAGCAGCAACAGGACGTGGTCACTACTCTGAAAGTGGCGGATC
TGGAAATGGACCTGTTGGCGCGAACAGTCAAACGCAACGGCTTGTCCATTGACTTGCAGCCGCGAGAATTCCGTTTGTTG
GAATACTTTATGCGCAATCCCGGTCAGGTTCTGACGCGCACCATGTTGCTGGAGAAAGTGTGGGATTATCACTTTGATCC
GCAAACCAACGTTATCGATGTTCATATCAGCCGTCTGCGGGCCAAGATCGATAAGGATTTTGAGACACCCTTGTTGCACA
CCATTCGTGGAGCAGGGTACGTCCTACGTGAAGCTGCCTAA

Protein sequence : 
MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGLSVVRMLRAGGSKTPVLVLSA
LGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQQQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLL
EYFMRNPGQVLTRTMLLEKVWDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLREAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-42 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-41 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_00579 YP_431907.1 response regulator BAC0083 Protein 1e-48 53
HCH_00579 YP_431907.1 response regulator BAC0125 Protein 4e-49 52
HCH_00579 YP_431907.1 response regulator BAC0347 Protein 4e-50 52
HCH_00579 YP_431907.1 response regulator BAC0638 Protein 2e-41 52
HCH_00579 YP_431907.1 response regulator BAC0111 Protein 7e-54 51
HCH_00579 YP_431907.1 response regulator BAC0197 Protein 2e-45 50
HCH_00579 YP_431907.1 response regulator BAC0308 Protein 1e-44 49
HCH_00579 YP_431907.1 response regulator HE999704.1.gene1528. Protein 5e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_00579 YP_431907.1 response regulator VFG1389 Protein 1e-33 47
HCH_00579 YP_431907.1 response regulator VFG0596 Protein 4e-42 46
HCH_00579 YP_431907.1 response regulator VFG1390 Protein 5e-40 45
HCH_00579 YP_431907.1 response regulator VFG1386 Protein 3e-35 42