Gene Information

Name : HCH_05280 (HCH_05280)
Accession : YP_436379.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type II secretory pathway prepilin signal peptidase PulO and related peptidase
Function : -
COG functional category : N : Cell motility
COG ID : COG1989
EC number : -
Position : 5422905 - 5423783 bp
Length : 879 bp
Strand : +
Note : COG1989

DNA sequence : 
ATGTTAGATATCTTTAATCAGTTCAATCACAATCCTGCGCTGCTTTATATAACGGTCGTTGTTTTCGGCTTGATTGTCGG
CAGTTTTTTGAATGTCGTTATTCTGCGGAAGCCAAAAATGCTGGAGCAGGAGTGGCGCGCTCAATGCGCCGAAATTCCAG
GCTGCGACTGCCCCAAAACAGACGAGCCCCTGATAACGCTTTCTAAACCCGATTCAACCTGCCCAAAGTGCGGACATAAA
ATCAGGGCTTGGGAAAATATTCCGGTAATCAGTTATTTGTTTCTTGGCGGCAAGTGCTCCTCGTGCAAAACAGGCATTTC
CATACGCTATCCTCTAGTGGAAATCGCCACCGCTTTATTAGCGGTCATTGTCGTCTGCTATTTCAAGATGAGTTGGGCGG
GACTGGCGGCCATTGGCTTAAGCTGGACATTGCTTACTTTGTCATTAATAGACTTCGACACTCAGTTACTGCCTGATGAC
CTGACGTTACCTTTACTTTGGGCGGGATTACTAATCAATATCCAGGGTATTTTCGCCCCCCTATCAGAAGCTGTGATTGG
CGCAGTAGTCGGCTACTTGGCTTTGTGGTCGGTCTACCACTTATTCCGCCTTTTGACTGGCAAGGAAGGCATGGGCTTTG
GCGATTTCAAGCTGCTCGCCGCTCTGGGCGCCTGGTTGGGGTGGAAAATGCTGCCCCTTATTATTCTGCTTTCCTCACTG
GTTGGAGCCGTTATTGGGATAGCAATGATCATTATCCTGGGTAGAGATAAGAATATCCCTATCCCCTTTGGTCCTTATCT
GGCCATCGCAGGCTGGATAGCTATGATCTGGGGAAATGATATCGTATCCGCCTATTTGGGAATGTACCCTGCGCCTTAG

Protein sequence : 
MLDIFNQFNHNPALLYITVVVFGLIVGSFLNVVILRKPKMLEQEWRAQCAEIPGCDCPKTDEPLITLSKPDSTCPKCGHK
IRAWENIPVISYLFLGGKCSSCKTGISIRYPLVEIATALLAVIVVCYFKMSWAGLAAIGLSWTLLTLSLIDFDTQLLPDD
LTLPLLWAGLLINIQGIFAPLSEAVIGAVVGYLALWSVYHLFRLLTGKEGMGFGDFKLLAALGAWLGWKMLPLIILLSSL
VGAVIGIAMIIILGRDKNIPIPFGPYLAIAGWIAMIWGNDIVSAYLGMYPAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85237.1 putative prepilin peptidase A Not tested PAI V 536 Protein 3e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_05280 YP_436379.1 type II secretory pathway prepilin signal peptidase PulO and related peptidase VFG0114 Protein 8e-55 57
HCH_05280 YP_436379.1 type II secretory pathway prepilin signal peptidase PulO and related peptidase VFG0234 Protein 6e-38 52
HCH_05280 YP_436379.1 type II secretory pathway prepilin signal peptidase PulO and related peptidase VFG1882 Protein 8e-41 48