Gene Information

Name : yscU (HCH_05114)
Accession : YP_436220.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretory pathway subunit EscU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 5270658 - 5271713 bp
Length : 1056 bp
Strand : +
Note : COG4792

DNA sequence : 
ATGAGCGATGAAAAAACCGAAAAGCCCACCCCCAAAAAGCTGCGCGACGCCCGTAAAAAGGGCCAGGTCGCCCATAGTAA
AGATGTGGTGTCCACCGCCACTATTTGTGCGATGTTTCTATTGCTGCTGGCTACCTCCGACACCTATCTCTCACACCTGA
GCATCTTGATCGAGCTGCCCGCCCAGTATATGGACAGGCCGTTTCTGGAAGCCCTGCCGATGGTGGTCGACAATGTGATC
TATGAGCTGATTTATCTCACGTTAATGCCCGTTGGCGTGGTCATGGCGTCCGCCATTCTGGCAAACTTTCTGCAAGTGGG
CGCTCTGTTTGCGGTAGAGTCACTGAAACCCGACCTCAAGAAGCTCAATCCGGTGGAGGGCTTCAAGAAAATCTTTTGCG
TCAAAAACTTCATTGAATTCATCAAGTCGCTGATCAAAGTGGGCGTGCTTTCCTATCTGGTCTATATGCTGATCAAGGAC
AATCTCAATGATTCCGCCCGGCTGCATTATTGTGAAGTGGAATGCATCCCGGATTTTGTCGGAACGCTGCTGAAGCAACT
CATTCTGTATTCCGCCATTACTTTCATCGCTCTCGCGGCGGCGGATTTCTTCATCCAGAAACAGCAGTTTATAAAGCAAC
AAAAAATGAGTAAGGACGAGGTCAAGCGGGAATACAAGCAAATGGAGGGCAGCCCGGAAATCAAGGGCAAGCGCAAGCAG
ATTCATCGGGAAATGATGAACACATCTATTCCGGCCCAAGTGAAAAAGTGCTCCGCCATCGTCACCAACCCCACCCATCT
GGCGGTCGGCATCTACTATGAAAAAGGCGTGGAGGACGTGCCCAAGGTCATGGTGAAAGGCGCGGACCAAATGGCCAAAG
TCATTCGCAAAATCGCTGAGGAAGAAGGCATCCCCATGATGGAGAACGTGCCGCTCGCCCGTGGTCTTTGGAAACGGGCG
CAGGTCAACGACTACGTCCCTCCCGACCTGTTCGAAGCTGTTGCGGCGGTGCTGCAGTGGGTGGACAGTCTTGATCAGCA
AAGACAGCAACGCTGA

Protein sequence : 
MSDEKTEKPTPKKLRDARKKGQVAHSKDVVSTATICAMFLLLLATSDTYLSHLSILIELPAQYMDRPFLEALPMVVDNVI
YELIYLTLMPVGVVMASAILANFLQVGALFAVESLKPDLKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKD
NLNDSARLHYCEVECIPDFVGTLLKQLILYSAITFIALAAADFFIQKQQFIKQQKMSKDEVKREYKQMEGSPEIKGKRKQ
IHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKGADQMAKVIRKIAEEEGIPMMENVPLARGLWKRA
QVNDYVPPDLFEAVAAVLQWVDSLDQQRQQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 5e-71 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscU YP_436220.1 type III secretory pathway subunit EscU VFG0185 Protein 1e-63 49
yscU YP_436220.1 type III secretory pathway subunit EscU VFG0397 Protein 1e-67 48
yscU YP_436220.1 type III secretory pathway subunit EscU VFG0041 Protein 1e-59 42