Gene Information

Name : yscT (HCH_05113)
Accession : YP_436219.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretory pathway subunit EscT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 5269866 - 5270654 bp
Length : 789 bp
Strand : +
Note : COG4791

DNA sequence : 
ATGATGACCCACTTGATGAGCGACACGCTGACGCTGTTCATGTTCACCGTGCCGCGTCTGCTGGCGGCCATGTCGGTCAT
GCCGTTCCTGAGCAAAAGCTTCTTCGGCGGCACGCTGATCCGCAACGGCGTGGTGCTCAGTCTGTCCCTGTTTCTGTTTC
CCATCGTGGACGAAGGCTACAAGCCGGAAACCATGGCGCCGTTTATGTACGCGCTCATTATTCTCAAGGAAGTGATCATC
GGGTTCTGTCTGGGCTGGCTGGCGGCGCTGCCGTTCTGGGCGCTGGAGGCGGTGGGCTTCTTTATCGACAATCAGCGCGG
CTCCACCATGGCCAGCGCCATGAACCCGCTGACCGGTTCTCAGGCCTCTCCCGTCGGCATTCTGTTCGTACAGACATTCA
CCACCCTGTTTTTTCTGGGAGGCAACTTCCTCACGCTGATGGGGGCCATTTACGCCAGTTACCACGCCTGGCCGATCTTC
TCATTTTTCCCGAGAATCGAACTGTCGGCCGCGGGCTTTTTCTTTGCGCAGCTGGACTACTTCATGAGCATCGTGGTGTT
GTTCGCCGCCCCGCTGATCGCCTGCATGTTCCTGGCTGAATTCGGCCTGGGACTGGTCAGTCGCTTCGCTCCCCAGCTCA
ACGTATTCTTCTTGTCCATGCCGATAAAAAGCCTGGTGTGCATGGTGATGCTGACTTTCTATGTGGGCGTGTTGATGCGC
ATTTTCGATGAACGTTATCTGCGCACCTTTGATTTATTCAAACAGCTCAACGTGCTATGGGGGTCGTGA

Protein sequence : 
MMTHLMSDTLTLFMFTVPRLLAAMSVMPFLSKSFFGGTLIRNGVVLSLSLFLFPIVDEGYKPETMAPFMYALIILKEVII
GFCLGWLAALPFWALEAVGFFIDNQRGSTMASAMNPLTGSQASPVGILFVQTFTTLFFLGGNFLTLMGAIYASYHAWPIF
SFFPRIELSAAGFFFAQLDYFMSIVVLFAAPLIACMFLAEFGLGLVSRFAPQLNVFFLSMPIKSLVCMVMLTFYVGVLMR
IFDERYLRTFDLFKQLNVLWGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 6e-36 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscT YP_436219.1 type III secretory pathway subunit EscT VFG0186 Protein 5e-35 53
yscT YP_436219.1 type III secretory pathway subunit EscT VFG0396 Protein 2e-36 49
yscT YP_436219.1 type III secretory pathway subunit EscT VFG0042 Protein 9e-31 42