Gene Information

Name : yscS (HCH_05112)
Accession : YP_436218.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretory pathway subunit EscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 5269597 - 5269869 bp
Length : 273 bp
Strand : +
Note : COG4794

DNA sequence : 
ATGAGCGAAGCGGAAGTCATTCATTACGCCAGTCAATTGCTGATGCTGGTGCTGGTGCTGTCGATGCCCACCGTCATCGT
CGCGGCGGTGGTGGGCACGCTGGTGAGTCTGGTGCAGTCGCTGACTCAGATCCAGGATCAGACCCTGTCCTTCGCCATCA
AGCTGATCGCGGTGTCCATCACTATTATGCTCACCGCGCGCTGGCTGGGCATTGAAATCTACCATTTTTCCATGAATATC
CTTGACCACATTGAGTTGATCGGCCCCTCATGA

Protein sequence : 
MSEAEVIHYASQLLMLVLVLSMPTVIVAAVVGTLVSLVQSLTQIQDQTLSFAIKLIAVSITIMLTARWLGIEIYHFSMNI
LDHIELIGPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-14 62
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 2e-07 50
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 1e-07 50
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 1e-07 50
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 9e-08 50
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 2e-07 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscS YP_436218.1 type III secretory pathway subunit EscS VFG0395 Protein 8e-15 68
yscS YP_436218.1 type III secretory pathway subunit EscS VFG0187 Protein 4e-10 55
yscS YP_436218.1 type III secretory pathway subunit EscS VFG0520 Protein 4e-08 50