Gene Information

Name : yscR (HCH_05111)
Accession : YP_436217.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 5268953 - 5269600 bp
Length : 648 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACTGATATACAGGCGATTCCTCTTATCGGGACGCTGGTCCTGCTGTCGCTGATCCCGTTCATCGCCATCATGACCAC
TTCCTTCATCAAGCTCGCCGTGGTGTTCAGCTTATTGCGCAACGCCCTCGGCATTCAGCAGATTCCGCCGAACATGGCGT
TATACGGATTGGCCATCGTGTTGTCGATCTACATCATGGCGCCGGTGGGCTACCAGATAGCGGATACGGTGAAAGAAAAA
GGCTTCGACCTGAGTCAGTCGGAATCGCTCAAAGAGCTGGCTAACAGCGCTATTGACCCAATGTCCGAGTTCCTGACCAA
ACACTCTTCCGAAAAGGAGCGCGGATTTTTTCTGGAAAGTGCGGAAACCCTGTGGCCCAAGGAGTACGCAGCGCGCCTGG
ACACCAACAGCATGCTGGTGCTGGTGCCGTCTTTCACCATCAGCGAGCTGAAATCCGCGTTTGAAATCGGCTTTCTGCTG
TATCTGCCGTTTATCGCCATCGACCTGATCGTTTCCAATATTTTGCTGGCGATGGGGATGATGATGGTGTCGCCGATGAC
AATCTCCCTGCCCTTTAAATTACTCCTGTTCGTGCTTCTGGACGGCTGGACCCGACTAACCCATGGCCTGGTGTTGAGTT
ACCAATGA

Protein sequence : 
MTDIQAIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYIMAPVGYQIADTVKEK
GFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETLWPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLL
YLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTRLTHGLVLSYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-57 67
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-40 54
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-41 54
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-41 54
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-41 54
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-40 54
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-45 52
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-43 51
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-43 50
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-38 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-38 50
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-38 50
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-43 50
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-43 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-44 49
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 49
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 49
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-40 49
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-43 49
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-43 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-43 48
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-43 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-43 48
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-43 48
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-44 48
escR AAK26700.1 EscR Virulence LEE Protein 2e-38 47
escR AAL57527.1 EscR Virulence LEE Protein 2e-38 47
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-37 47
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-38 47
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-38 47
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-38 47
escR AAC31528.1 L0049 Virulence LEE Protein 2e-38 47
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-38 47
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-38 47
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-37 47
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-38 47
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-37 47
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-38 47
escR AAC38369.1 EscR Virulence LEE Protein 1e-37 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 9e-39 47
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-37 47
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 42
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 9e-36 42
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-36 42
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-27 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-27 41
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR YP_436217.1 type III secretion system protein VFG0188 Protein 1e-59 67
yscR YP_436217.1 type III secretion system protein VFG0394 Protein 5e-56 65
yscR YP_436217.1 type III secretion system protein VFG0519 Protein 1e-41 54
yscR YP_436217.1 type III secretion system protein VFG0044 Protein 8e-49 53
yscR YP_436217.1 type III secretion system protein VFG0827 Protein 9e-39 47
yscR YP_436217.1 type III secretion system protein VFG0715 Protein 7e-38 47
yscR YP_436217.1 type III secretion system protein VFG0551 Protein 2e-28 42
yscR YP_436217.1 type III secretion system protein VFG1012 Protein 7e-32 41